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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015867513.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 25969.5 Da PI: 7.0981 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.5 | 4.2e-12 | 13 | 71 | 37 | 99 |
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 t++ ++gr W++ + +k +gr+v+ +GW+eFv+ + +++g f+vF++dg s+f +v ++++ XP_015867513.1 13 TITVPNGRIWKLDF--QKLGGRIVFVDGWQEFVEYHSIDSGYFLVFRYDGFSKF--HVCILDE 71 566799********..********************************988888..9999876 PP | |||||||
2 | B3 | 50.8 | 3e-16 | 129 | 214 | 10 | 96 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ ++ +p f+ ++++ +s+ +t + +g++W+v+++ ++ +r+ ++kGW++Fv++n+L +gD++vF+l+ ++ + l+v++ XP_015867513.1 129 MSMKNKRHVPMGFVMTYMQG--CSQVIT-LTCNGKKWQVTFSLkeHRTVNRIRISKGWRGFVRDNNLGAGDVCVFELIMKKATLLKVSI 214 44455577899**9999744..775555.667*********995556666699***********************9976666566665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.407 | 1 | 72 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.19 | 5 | 72 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.98E-11 | 10 | 70 | No hit | No description |
SuperFamily | SSF101936 | 8.44E-15 | 12 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.9E-9 | 13 | 70 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-14 | 13 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.296 | 120 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-9 | 120 | 218 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-18 | 124 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.51E-16 | 124 | 215 | No hit | No description |
Pfam | PF02362 | 2.5E-14 | 128 | 214 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.47E-17 | 128 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MNINFVGGIV FATITVPNGR IWKLDFQKLG GRIVFVDGWQ EFVEYHSIDS GYFLVFRYDG 60 FSKFHVCILD ESGTEIYYPW NAASSDVEPH SDKESSEDHD QDNEDDDDDD VEIIDNKMFA 120 SRRLSRRQMS MKNKRHVPMG FVMTYMQGCS QVITLTCNGK KWQVTFSLKE HRTVNRIRIS 180 KGWRGFVRDN NLGAGDVCVF ELIMKKATLL KVSIYYADPA KKCSK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015867513.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015867513.1 | 1e-169 | B3 domain-containing transcription factor VRN1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-16 | B3 family protein |