PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015867026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 315aa MW: 35181.9 Da PI: 9.631 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 119 | 165 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +++ +k+L XP_015867026.1 119 KSHSQAEKRRRDRINAQLSTLRKLIPKS-----DKMDKAALLGSVIDQVKDL 165 79*************************8.....7***********9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.066 | 116 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-12 | 118 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.7E-14 | 119 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.58E-9 | 119 | 168 | No hit | No description |
Pfam | PF00010 | 4.0E-10 | 119 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 122 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 2.06E-5 | 214 | 285 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 6.7E-6 | 215 | 273 | No hit | No description |
CDD | cd04873 | 3.46E-7 | 219 | 287 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MWDKKQRELE LRYLQIQCFV FNFSLVFCFF FPQERSNNME NVYHPNWSEP ANSSRYKSAT 60 ISSSTTATST ESSFLLPWSL SPHASTSSTF QFSGFPSTTS SGSIPFERIA EDRAAAASKS 120 HSQAEKRRRD RINAQLSTLR KLIPKSDKMD KAALLGSVID QVKDLKRKAM EVSKAIIVPT 180 EVDEVAIESS TDELSEGQDV NLSVSKSNNS NNNNTYIRVS VCCEDRPELF SELIQVLKGL 240 KLSAVRAEVA SVGGRIKSVL VLSSNKDTDD KEAICINSLK QSLKLVLTKI ASSSVPSNCR 300 IRSKRQRFFL PSHFS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015867026.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015867026.1 | 0.0 | transcription factor bHLH51 isoform X1 | ||||
Refseq | XP_015867031.1 | 0.0 | transcription factor bHLH51 isoform X2 | ||||
TrEMBL | W9RZG0 | 1e-108 | W9RZG0_9ROSA; Uncharacterized protein | ||||
STRING | XP_010105437.1 | 1e-109 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5796 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 9e-48 | bHLH family protein |