PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866969.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 335aa    MW: 36958.9 Da    PI: 6.4097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.85.3e-154897255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY++ Lq
  XP_015866969.1 48 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLVEVIEYVQVLQ 97
                    899*************************9....8*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-1844118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-2145118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.6634696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-1448101No hitNo description
PfamPF000102.2E-124897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1052102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRTATKGNQE EEEYDEDDFG SKKEGPSSNN NNPNSKDGKN NDKASAIRSK HSVTEQRRRS  60
KINERFQILR DLIPHSDQKR DTASFLVEVI EYVQVLQEKL QKYEGSYQGW SPEPTKLMPW  120
RNSHWRVQSY IGSPQGIKNG SGPGSNFPGK FDENSISINP TMLPSTQNPV ESDPSRDVPC  180
KAMDRHPEIA NKGIPLPMPL QASMSAPMRS DGVLAHSLQG PVSDAQSMQC PCTSDTINQQ  240
EELMIEGGTI SISSAYSQGL LNNLAQALQS AGVDLSQASI SVQIDLGKRA NRGLSSRMPI  300
SKEYENPTSS NQTMAHHKDT GNGEDSDQAQ KRLKT
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866969.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866969.10.0transcription factor BIM2-like
RefseqXP_024924458.10.0transcription factor BIM2-like
SwissprotQ9CAA41e-124BIM2_ARATH; Transcription factor BIM2
TrEMBLM5XCV50.0M5XCV5_PRUPE; Uncharacterized protein
STRINGEMJ237640.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-105BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]