PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866885.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 428aa    MW: 47713.1 Da    PI: 7.2295
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.64.6e-3282186199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_015866885.1  82 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSNNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGDlGK 176
                     89****************************77788999*************************************************77799999 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_015866885.1 177 DRLYIDWRRR 186
                     999*999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-4176191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-2979170IPR015300DNA-binding pseudobarrel domain
CDDcd100179.46E-2780169No hitNo description
SMARTSM010191.6E-2282187IPR003340B3 DNA binding domain
PROSITE profilePS5086314.77682187IPR003340B3 DNA binding domain
PfamPF023621.5E-2982186IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MMDFMSGRGG GFSEDEHTAT ARGFSSNWVF EGQEGPDTKL ELMESSPGNE MVEDGRRGEK  60
SSSADAREGG GVSCCIEREH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSNNEKGLL  120
LNFEDRNGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG LGDLGKDRLY  180
IDWRRRPDAA AAADPSSIHH RHLPNPRLSF HHYRGSSMPW SPLLMRPPGA TPPSVSSVMP  240
QLHQRDHLHL PPHLHLNYGH QYPYRNSTTY GFGNVVNPPV YNYNYYQLRS ASMASASASA  300
ATQDDDDDED HHHHQMQQQA VQLQQPHHMP PVVFNSVPVV HGKAAAKRLR LFGVNMECPT  360
LETTPSTGDE HEQCGVVLSP TTLAAATPQQ ALVSSTPSSM SQSAAAAPHH QLRLYHGTPL  420
PGTNHPHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-66771873114B3 domain-containing transcription factor NGA1
5os9_B2e-66771873114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866885.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866885.10.0B3 domain-containing protein Os03g0120900-like
TrEMBLA0A2P6P4B61e-108A0A2P6P4B6_ROSCH; Putative transcription factor B3-Domain family
STRINGEOY238141e-107(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-62B3 family protein