PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015866794.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 487aa MW: 52721.7 Da PI: 6.9381

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015866794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	7.1e-06	378	416	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_015866794.1 378 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 416 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.798	367	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-11	377	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.01E-7	377	420	No hit	No description
SMART	SM00353	0.0049	378	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-9	381	424	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MADEYQTSGN WWESSRTSRF EAGTSPSSSA LNSLGSFGWS STDMVDSIKA RSPMDSVSVS 60 GTSMVFHDIQ KPQLQGSDSS GGGGAADPNL HMMGLGLSTQ AMDWNQALFR GEKSAESSFR 120 SILQENMNAN ANFQQEGGVQ QQLQWRDHKL FAAAAAGGDS TSNRSAGGGG GGFSLDQSSQ 180 FSPQYSSGDS TITSSFQMDS AAAAAAALYG NQSTILQGLF GGTDTSNNNN NNNQQSSSSN 240 SFPYPATTYG IGSINELPHH HHHHHQQQQQ PSTWSKVPQF LRTGSPPKQQ QQQPYNHLHF 300 SNNAPYWNAS EAAIKEVRPG FFPSLQPQFP TQSFEEKPKN ISEVRDSSAA AVVKKSGNEA 360 ASKRPRNETA SPLPAFKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI EYIKFLHEQV 420 TVLSTPYMKS GSAIPHQQSS DKSKDPEGPK QDLRSRGLCL VPVSSTFPVT HETTVDFWTP 480 TFGGTYR

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MADEYQTSGN WWESSRTSRF EAGTSPSSSA LNSLGSFGWS STDMVDSIKA RSPMDSVSVS  60
GTSMVFHDIQ KPQLQGSDSS GGGGAADPNL HMMGLGLSTQ AMDWNQALFR GEKSAESSFR  120
SILQENMNAN ANFQQEGGVQ QQLQWRDHKL FAAAAAGGDS TSNRSAGGGG GGFSLDQSSQ  180
FSPQYSSGDS TITSSFQMDS AAAAAAALYG NQSTILQGLF GGTDTSNNNN NNNQQSSSSN  240
SFPYPATTYG IGSINELPHH HHHHHQQQQQ PSTWSKVPQF LRTGSPPKQQ QQQPYNHLHF  300
SNNAPYWNAS EAAIKEVRPG FFPSLQPQFP TQSFEEKPKN ISEVRDSSAA AVVKKSGNEA  360
ASKRPRNETA SPLPAFKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI EYIKFLHEQV  420
TVLSTPYMKS GSAIPHQQSS DKSKDPEGPK QDLRSRGLCL VPVSSTFPVT HETTVDFWTP  480
TFGGTYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015866794.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015866794.1	0.0	transcription factor bHLH123-like
TrEMBL	A0A498ILG9	0.0	A0A498ILG9_MALDO; Uncharacterized protein
STRING	XP_008386041.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-77	bHLH family protein