PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015866776.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

SRS

Protein Properties

Length: 382aa MW: 39516.6 Da PI: 9.1912

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015866776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	131.6	8.3e-41	256	358	2	104
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 +sgt++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + a++ a +sa+++ +k++r +s++++++s+t++s++++ XP_015866776.1 256 SSGTTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSGVAAAAAGSSASTSGAKKPRLVTSQQTTTTSHTSTSNTTP 350 57899**************************************************************************************** PP DUF702 97 kkeletss 104 +++++tss XP_015866776.1 351 PRSFDTSS 358 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.5E-34	259	350	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.8E-27	261	303	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
YWIGLDLIKK GKSSELVVAT TRRLPSDSGA FADWVASSSS AAAAARPPPT VPDDLSLGFN 60 AGPTAAAAGA TSSSMWPLGG PSSSSSRPIN YGLPPEMGMV GLRDVFVVAP ASSFHPHNNH 120 HHHHHLHHHH EPLLSSSSDH PHSINVSSNP ATALGVGVGV GVIPLLTASP CLATAPPPNL 180 AGSIDDDSSN ALAARSRSGG IQLWQQQNQQ QQTQQHFFKK PAILDHGGNS GGGAAHLVQN 240 SDGSGGLGGS GGGGSSSGTT TCQDCGNQAK KDCSHRRCRT CCKSRGFDCA THVKSTWVPA 300 ARRRERQLMS GVAAAAAGSS ASTSGAKKPR LVTSQQTTTT SHTSTSNTTP PRSFDTSSSH 360 QGFLFFHFSS TSSSSSLYFV FI

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

YWIGLDLIKK GKSSELVVAT TRRLPSDSGA FADWVASSSS AAAAARPPPT VPDDLSLGFN  60
AGPTAAAAGA TSSSMWPLGG PSSSSSRPIN YGLPPEMGMV GLRDVFVVAP ASSFHPHNNH  120
HHHHHLHHHH EPLLSSSSDH PHSINVSSNP ATALGVGVGV GVIPLLTASP CLATAPPPNL  180
AGSIDDDSSN ALAARSRSGG IQLWQQQNQQ QQTQQHFFKK PAILDHGGNS GGGAAHLVQN  240
SDGSGGLGGS GGGGSSSGTT TCQDCGNQAK KDCSHRRCRT CCKSRGFDCA THVKSTWVPA  300
ARRRERQLMS GVAAAAAGSS ASTSGAKKPR LVTSQQTTTT SHTSTSNTTP PRSFDTSSSH  360
QGFLFFHFSS TSSSSSLYFV FI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015866776.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015866776.2	0.0	protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2P5FIH4	1e-103	A0A2P5FIH4_TREOI; Protein LATERAL ROOT PRIMORDIUM
STRING	XP_010269431.1	9e-84	(Nelumbo nucifera)
STRING	XP_010034259.1	1e-83	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.3	1e-29	Lateral root primordium (LRP) protein-related