PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015866619.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 545aa MW: 62138.8 Da PI: 5.3509

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015866619.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.9	2.6e-09	423	471	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+ E +lv++v q G g+W+ I r + +Rt ++k++w+++l XP_015866619.1 423 SWTPSEVVKLVEGVSQCGVGRWTEIKRLLFsssSHRTSVDLKDKWRNLL 471 5**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.575	416	475	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-11	417	476	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-10	420	473	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-7	423	471	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.23E-15	424	480	IPR009057	Homeodomain-like
CDD	cd11660	5.72E-18	424	472	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MFTCKPYKVD PDIPFFTASE DEPGGIEHFL GEPECKDDLV SNLLDLDMFQ IQKCFDVEDI 60 SGTFDGEIRL DSDTMRPNLT QGEGENLEFL YEMFQGSNNG DVRGQNTLST SEEFLLDAKY 120 ADDTFKLDHG PCKDSYLGNV ALQTQSPGIH KRDSASEILD LSSVGDPVFK CMNNHSSLHD 180 HIAVEEVNEA FKNMSEYETS VMDSKWLQQH EIFGLKNYFE MENGLSLMKF DLTTIEHEGN 240 HQVKRKRLTG SELLKTMNSD VRKVELFSFD GEDKAEPLVT QKRSRKPPRR YIEESLDYSS 300 KSSNRKCGMA YRRSKDQFLH VKSQKQKWQN EFQAVQVFPQ EDSFDGNCIQ VPFDLPMERE 360 HSKKNKSFLV KDAEDCKDNR LLCPVDKLDV EALSAESQED VSEDECMARS YAKGGGRRKR 420 HISWTPSEVV KLVEGVSQCG VGRWTEIKRL LFSSSSHRTS VDLKDKWRNL LRASCTQLQI 480 KEKVENGRKQ ATNHIPESVL WRVRELAIMH PYPRESRSKV SCTAPAVSSF TAATDNTLVP 540 LPTAV

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MFTCKPYKVD PDIPFFTASE DEPGGIEHFL GEPECKDDLV SNLLDLDMFQ IQKCFDVEDI  60
SGTFDGEIRL DSDTMRPNLT QGEGENLEFL YEMFQGSNNG DVRGQNTLST SEEFLLDAKY  120
ADDTFKLDHG PCKDSYLGNV ALQTQSPGIH KRDSASEILD LSSVGDPVFK CMNNHSSLHD  180
HIAVEEVNEA FKNMSEYETS VMDSKWLQQH EIFGLKNYFE MENGLSLMKF DLTTIEHEGN  240
HQVKRKRLTG SELLKTMNSD VRKVELFSFD GEDKAEPLVT QKRSRKPPRR YIEESLDYSS  300
KSSNRKCGMA YRRSKDQFLH VKSQKQKWQN EFQAVQVFPQ EDSFDGNCIQ VPFDLPMERE  360
HSKKNKSFLV KDAEDCKDNR LLCPVDKLDV EALSAESQED VSEDECMARS YAKGGGRRKR  420
HISWTPSEVV KLVEGVSQCG VGRWTEIKRL LFSSSSHRTS VDLKDKWRNL LRASCTQLQI  480
KEKVENGRKQ ATNHIPESVL WRVRELAIMH PYPRESRSKV SCTAPAVSSF TAATDNTLVP  540
LPTAV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015866619.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024924317.1	0.0	uncharacterized protein LOC107404186 isoform X4
TrEMBL	W9SRL6	0.0	W9SRL6_9ROSA; Telomere repeat-binding protein 4
STRING	XP_010109483.1	0.0	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-34	TRF-like 6