PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015866618.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 565aa MW: 64246 Da PI: 5.3557

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015866618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.9	2.8e-09	443	491	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+ E +lv++v q G g+W+ I r + +Rt ++k++w+++l XP_015866618.1 443 SWTPSEVVKLVEGVSQCGVGRWTEIKRLLFsssSHRTSVDLKDKWRNLL 491 5**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.575	436	495	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	437	496	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-10	440	493	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-7	443	491	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.37E-15	444	500	IPR009057	Homeodomain-like
CDD	cd11660	4.79E-18	444	492	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MFTCKPYKVD PDIPFFTASE DEPGGIEHFL GEPECKDDLV SNLLDLDMFQ IQKCFDVEDI 60 SGTFDDTMRP NLTQGEGENL EFLYEMFQGS NNGDVRGQNT LSTSEEFLLD AKYADDTFKL 120 DHGPCKDSYL GNVALQTQSP GIHKRDSASE ILDLSSVGDP VFKCMNNHSS LHDHIAVEEV 180 NEAFKNMSEY ETSVMDSKWL QQHEIFGLKN YFEMENGLSL MKFDLTTIEH EGKTSSNIDY 240 AASTTEPVIR TLNNENISGN HQVKRKRLTG SELLKTMNSD VRKVELFSFD GEDKAEPLVT 300 QKRSRKPPRR YIEESLDYSS KSSNRKCGMA YRRSKDQFLH VKSQKQKWQN EFQAVQVFPQ 360 EDSFDGNCIQ VPFDLPMERE HSKKNKSFLV KDAEDCKDNR LLCPVDKLDV EALSAESQED 420 VSEDECMARS YAKGGGRRKR HISWTPSEVV KLVEGVSQCG VGRWTEIKRL LFSSSSHRTS 480 VDLKDKWRNL LRASCTQLQI KEKVENGRKQ ATNHIPESVL WRVRELAIMH PYPRESRSKV 540 SCTAPAVSSF TAATDNTLVP LPTAV

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MFTCKPYKVD PDIPFFTASE DEPGGIEHFL GEPECKDDLV SNLLDLDMFQ IQKCFDVEDI  60
SGTFDDTMRP NLTQGEGENL EFLYEMFQGS NNGDVRGQNT LSTSEEFLLD AKYADDTFKL  120
DHGPCKDSYL GNVALQTQSP GIHKRDSASE ILDLSSVGDP VFKCMNNHSS LHDHIAVEEV  180
NEAFKNMSEY ETSVMDSKWL QQHEIFGLKN YFEMENGLSL MKFDLTTIEH EGKTSSNIDY  240
AASTTEPVIR TLNNENISGN HQVKRKRLTG SELLKTMNSD VRKVELFSFD GEDKAEPLVT  300
QKRSRKPPRR YIEESLDYSS KSSNRKCGMA YRRSKDQFLH VKSQKQKWQN EFQAVQVFPQ  360
EDSFDGNCIQ VPFDLPMERE HSKKNKSFLV KDAEDCKDNR LLCPVDKLDV EALSAESQED  420
VSEDECMARS YAKGGGRRKR HISWTPSEVV KLVEGVSQCG VGRWTEIKRL LFSSSSHRTS  480
VDLKDKWRNL LRASCTQLQI KEKVENGRKQ ATNHIPESVL WRVRELAIMH PYPRESRSKV  540
SCTAPAVSSF TAATDNTLVP LPTAV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015866618.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024924316.1	0.0	uncharacterized protein LOC107404186 isoform X2
TrEMBL	W9SRL6	0.0	W9SRL6_9ROSA; Telomere repeat-binding protein 4
STRING	XP_010109483.1	0.0	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	7e-32	TRF-like 6