PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015866616.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 572aa MW: 65016.9 Da PI: 5.2782

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015866616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.8e-09	450	498	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+ E +lv++v q G g+W+ I r + +Rt ++k++w+++l XP_015866616.1 450 SWTPSEVVKLVEGVSQCGVGRWTEIKRLLFsssSHRTSVDLKDKWRNLL 498 5**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.575	443	502	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	444	503	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-10	447	500	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-7	450	498	IPR001005	SANT/Myb domain
CDD	cd11660	5.08E-18	451	499	No hit	No description
SuperFamily	SSF46689	2.44E-15	451	507	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence Send to blast
MFTCKPYKVD PDIPFFTASE DEPGGIEHFL GEPECKDDLV SNLLDLDMFQ IQKCFDVEDI 60 SGTFDGEIRL DSDTMRPNLT QGEGENLEFL YEMFQGSNNG DVRGQNTLST SEEFLLDAKY 120 ADDTFKLDHG PCKDSYLGNV ALQTQSPGIH KRDSASEILD LSSVGDPVFK CMNNHSSLHD 180 HIAVEEVNEA FKNMSEYETS VMDSKWLQQH EIFGLKNYFE MENGLSLMKF DLTTIEHEGK 240 TSSNIDYAAS TTEPVIRTLN NENISGNHQV KRKRLTGSEL LKTMNSDVRK VELFSFDGED 300 KAEPLVTQKR SRKPPRRYIE ESLDYSSKSS NRKCGMAYRR SKDQFLHVKS QKQKWQNEFQ 360 AVQVFPQEDS FDGNCIQVPF DLPMEREHSK KNKSFLVKDA EDCKDNRLLC PVDKLDVEAL 420 SAESQEDVSE DECMARSYAK GGGRRKRHIS WTPSEVVKLV EGVSQCGVGR WTEIKRLLFS 480 SSSHRTSVDL KDKWRNLLRA SCTQLQIKEK VENGRKQATN HIPESVLWRV RELAIMHPYP 540 RESRSKVSCT APAVSSFTAA TDNTLVPLPT AV

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence Send to blast

MFTCKPYKVD PDIPFFTASE DEPGGIEHFL GEPECKDDLV SNLLDLDMFQ IQKCFDVEDI  60
SGTFDGEIRL DSDTMRPNLT QGEGENLEFL YEMFQGSNNG DVRGQNTLST SEEFLLDAKY  120
ADDTFKLDHG PCKDSYLGNV ALQTQSPGIH KRDSASEILD LSSVGDPVFK CMNNHSSLHD  180
HIAVEEVNEA FKNMSEYETS VMDSKWLQQH EIFGLKNYFE MENGLSLMKF DLTTIEHEGK  240
TSSNIDYAAS TTEPVIRTLN NENISGNHQV KRKRLTGSEL LKTMNSDVRK VELFSFDGED  300
KAEPLVTQKR SRKPPRRYIE ESLDYSSKSS NRKCGMAYRR SKDQFLHVKS QKQKWQNEFQ  360
AVQVFPQEDS FDGNCIQVPF DLPMEREHSK KNKSFLVKDA EDCKDNRLLC PVDKLDVEAL  420
SAESQEDVSE DECMARSYAK GGGRRKRHIS WTPSEVVKLV EGVSQCGVGR WTEIKRLLFS  480
SSSHRTSVDL KDKWRNLLRA SCTQLQIKEK VENGRKQATN HIPESVLWRV RELAIMHPYP  540
RESRSKVSCT APAVSSFTAA TDNTLVPLPT AV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015866616.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024924315.1	0.0	uncharacterized protein LOC107404186 isoform X1
TrEMBL	W9SRL6	0.0	W9SRL6_9ROSA; Telomere repeat-binding protein 4
STRING	XP_010109483.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15018	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	7e-32	TRF-like 6