PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866475.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 663aa    MW: 74418.3 Da    PI: 5.4261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07560607347
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                       WT+e++++++  v   ++      W++I + ++ ++++++++s+++++
   XP_015866475.1 560 YWTKEDQKKFKAIVSSNPPSieisFWNKIFKSFP-TKSREDLVSYYFNV 607
                      6*****************88**************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010142.9E-944136No hitNo description
PROSITE profilePS5101115.80447140IPR001606ARID DNA-binding domain
SMARTSM005017.9E-1648141IPR001606ARID DNA-binding domain
SuperFamilySSF467746.8E-1652145IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.603.6E-1353147IPR001606ARID DNA-binding domain
PfamPF013884.8E-1062136IPR001606ARID DNA-binding domain
SMARTSM011898.3E-4461512IPR000949ELM2 domain
PfamPF002491.8E-5561607IPR001005SANT/Myb domain
CDDcd001672.51E-4561608No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MIAGGSTLDC AKTPKKLEST GLVVDLQSVL EFKPNELPNP SSEGLIGKLR WWFDQCLGVF  60
LKEICAKDTF RPLPPMLGDG QCVDLFKLFS VVREKGGCNA VSEKKLWDSV AEESGLGLSF  120
TAAVKLVYIK YLDTLERWLG RVALKDPKSS LSSSGSDLDE YLMELQAGFK RFMSEIADGK  180
ANDGGLYPHL PSDLKLEDVD ELKRVVVDSD GCRNCDVGGK NLNSDFGKKN GDVGKLCVGD  240
VECLEGETGK SKKCVDGNEG FPCSDIKKLR GVHDIKSVVD LDGWKSCDDD DGGDEDLMIL  300
DPETIDKENF GNKRKRESLW GMLDWVTMVA KDPCDPAIGL LPDKSKWKSY SDTEIWKQVL  360
MAREAIFSKR NIDSGGEQSY LQKIQRMHPS MYDDQLGSGY NLRERLRCGK KLLYGKMASH  420
GGANAESSDL DRSPSPGSAG LEDHFDKQLG ATESSMPIKV VPLGSNFQVE VPAWTGETSE  480
SESKWLGVRL WPLEKSEHRF LIERDPIGKG RQDSCGCQMP GSTECVRFHV AEKKLRLKME  540
LGSAFYQWRF DKMGEDVALY WTKEDQKKFK AIVSSNPPSI EISFWNKIFK SFPTKSREDL  600
VSYYFNVFVL RRRGYQNRFT PTYIDSDNDE FESMLVANGF GHETHDSPNN NLLHENKQHE  660
SKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866475.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866474.10.0AT-rich interactive domain-containing protein 1 isoform X2
RefseqXP_015866475.10.0AT-rich interactive domain-containing protein 1 isoform X2
TrEMBLA0A2P5F2U70.0A0A2P5F2U7_TREOI; ARID DNA-binding domain containing protein
STRINGXP_008352685.10.0(Malus domestica)