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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015866474.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 663aa MW: 74418.3 Da PI: 5.4261 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.8e-07 | 560 | 607 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 WT+e++++++ v ++ W++I + ++ ++++++++s+++++ XP_015866474.1 560 YWTKEDQKKFKAIVSSNPPSieisFWNKIFKSFP-TKSREDLVSYYFNV 607 6*****************88**************.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01014 | 2.9E-9 | 44 | 136 | No hit | No description |
PROSITE profile | PS51011 | 15.804 | 47 | 140 | IPR001606 | ARID DNA-binding domain |
SMART | SM00501 | 7.9E-16 | 48 | 141 | IPR001606 | ARID DNA-binding domain |
SuperFamily | SSF46774 | 6.8E-16 | 52 | 145 | IPR001606 | ARID DNA-binding domain |
Gene3D | G3DSA:1.10.150.60 | 3.6E-13 | 53 | 147 | IPR001606 | ARID DNA-binding domain |
Pfam | PF01388 | 4.8E-10 | 62 | 136 | IPR001606 | ARID DNA-binding domain |
SMART | SM01189 | 8.3E-4 | 461 | 512 | IPR000949 | ELM2 domain |
Pfam | PF00249 | 1.8E-5 | 561 | 607 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-4 | 561 | 608 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0016575 | Biological Process | histone deacetylation | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0000118 | Cellular Component | histone deacetylase complex | ||||
GO:0048555 | Cellular Component | generative cell nucleus | ||||
GO:0048556 | Cellular Component | microsporocyte nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MIAGGSTLDC AKTPKKLEST GLVVDLQSVL EFKPNELPNP SSEGLIGKLR WWFDQCLGVF 60 LKEICAKDTF RPLPPMLGDG QCVDLFKLFS VVREKGGCNA VSEKKLWDSV AEESGLGLSF 120 TAAVKLVYIK YLDTLERWLG RVALKDPKSS LSSSGSDLDE YLMELQAGFK RFMSEIADGK 180 ANDGGLYPHL PSDLKLEDVD ELKRVVVDSD GCRNCDVGGK NLNSDFGKKN GDVGKLCVGD 240 VECLEGETGK SKKCVDGNEG FPCSDIKKLR GVHDIKSVVD LDGWKSCDDD DGGDEDLMIL 300 DPETIDKENF GNKRKRESLW GMLDWVTMVA KDPCDPAIGL LPDKSKWKSY SDTEIWKQVL 360 MAREAIFSKR NIDSGGEQSY LQKIQRMHPS MYDDQLGSGY NLRERLRCGK KLLYGKMASH 420 GGANAESSDL DRSPSPGSAG LEDHFDKQLG ATESSMPIKV VPLGSNFQVE VPAWTGETSE 480 SESKWLGVRL WPLEKSEHRF LIERDPIGKG RQDSCGCQMP GSTECVRFHV AEKKLRLKME 540 LGSAFYQWRF DKMGEDVALY WTKEDQKKFK AIVSSNPPSI EISFWNKIFK SFPTKSREDL 600 VSYYFNVFVL RRRGYQNRFT PTYIDSDNDE FESMLVANGF GHETHDSPNN NLLHENKQHE 660 SKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015866474.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015866474.1 | 0.0 | AT-rich interactive domain-containing protein 1 isoform X2 | ||||
Refseq | XP_015866475.1 | 0.0 | AT-rich interactive domain-containing protein 1 isoform X2 | ||||
TrEMBL | A0A2P5F2U7 | 0.0 | A0A2P5F2U7_TREOI; ARID DNA-binding domain containing protein | ||||
STRING | XP_008352685.1 | 0.0 | (Malus domestica) |