PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866473.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 668aa    MW: 74950.9 Da    PI: 5.4261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866473.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07565612347
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                       WT+e++++++  v   ++      W++I + ++ ++++++++s+++++
   XP_015866473.1 565 YWTKEDQKKFKAIVSSNPPSieisFWNKIFKSFP-TKSREDLVSYYFNV 612
                      6*****************88**************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010142.9E-949141No hitNo description
PROSITE profilePS5101115.80452145IPR001606ARID DNA-binding domain
SMARTSM005017.9E-1653146IPR001606ARID DNA-binding domain
SuperFamilySSF467746.8E-1657150IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.603.7E-1358152IPR001606ARID DNA-binding domain
PfamPF013884.8E-1067141IPR001606ARID DNA-binding domain
SMARTSM011898.3E-4466517IPR000949ELM2 domain
PfamPF002491.8E-5566612IPR001005SANT/Myb domain
CDDcd001672.63E-4566613No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MAGWSMIAGG STLDCAKTPK KLESTGLVVD LQSVLEFKPN ELPNPSSEGL IGKLRWWFDQ  60
CLGVFLKEIC AKDTFRPLPP MLGDGQCVDL FKLFSVVREK GGCNAVSEKK LWDSVAEESG  120
LGLSFTAAVK LVYIKYLDTL ERWLGRVALK DPKSSLSSSG SDLDEYLMEL QAGFKRFMSE  180
IADGKANDGG LYPHLPSDLK LEDVDELKRV VVDSDGCRNC DVGGKNLNSD FGKKNGDVGK  240
LCVGDVECLE GETGKSKKCV DGNEGFPCSD IKKLRGVHDI KSVVDLDGWK SCDDDDGGDE  300
DLMILDPETI DKENFGNKRK RESLWGMLDW VTMVAKDPCD PAIGLLPDKS KWKSYSDTEI  360
WKQVLMAREA IFSKRNIDSG GEQSYLQKIQ RMHPSMYDDQ LGSGYNLRER LRCGKKLLYG  420
KMASHGGANA ESSDLDRSPS PGSAGLEDHF DKQLGATESS MPIKVVPLGS NFQVEVPAWT  480
GETSESESKW LGVRLWPLEK SEHRFLIERD PIGKGRQDSC GCQMPGSTEC VRFHVAEKKL  540
RLKMELGSAF YQWRFDKMGE DVALYWTKED QKKFKAIVSS NPPSIEISFW NKIFKSFPTK  600
SREDLVSYYF NVFVLRRRGY QNRFTPTYID SDNDEFESML VANGFGHETH DSPNNNLLHE  660
NKQHESKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866473.10.0AT-rich interactive domain-containing protein 1 isoform X1
RefseqXP_024924264.10.0AT-rich interactive domain-containing protein 1 isoform X1
TrEMBLA0A2P5F2U70.0A0A2P5F2U7_TREOI; ARID DNA-binding domain containing protein
STRINGXP_008352685.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724