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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015866409.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 109aa MW: 12708.5 Da PI: 9.347 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.3 | 4.9e-12 | 12 | 100 | 10 | 95 |
HHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 10 vlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 k + +++p +f + + gg ++t++ +d +g ++++ l++rk+ ++ ++ +kGW++Fvk+ng+ +gD ++F ++ +++e+v+ XP_015866409.1 12 DYK-SKFTVPPEFHDLInhcdGGA---ETTVKAYD-TGFRYDFVLSVRKGERKkymkpVFQQKGWQRFVKDNGVLTGDNITFW--KDvQTGEFVI 99 333.44899999965445464333...34677777.99*******99777776444445556********************9..4446776666 PP E CS B3 95 k 95 + XP_015866409.1 100 R 100 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.684 | 2 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-8 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-9 | 6 | 100 | No hit | No description |
SuperFamily | SSF101936 | 1.08E-9 | 9 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.2E-9 | 14 | 99 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MAVLSKEVSE TDYKSKFTVP PEFHDLINHC DGGAETTVKA YDTGFRYDFV LSVRKGERKK 60 YMKPVFQQKG WQRFVKDNGV LTGDNITFWK DVQTGEFVIR SVRPYINYL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015866409.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |