PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015866259.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 451aa    MW: 49399.6 Da    PI: 6.2389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015866259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.87.9e-08358398954
                     HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      r+RR+ri +++  L++l+P  +      K++ a++L +A +Y+k L
  XP_015866259.1 358 ARQRRERISERIRVLQRLVPGgN------KMDTASMLDEAANYLKFL 398
                     69******************955......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.11349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-14354413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-12357407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-5358398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-4371403No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDGLGWDVAA ANTSSLWSSH HQHDNNIDES FLMSNSSSSI LNPIQELQKS HPPHGQRVVD  60
GLVVQQISSM FDVDVASNLN NMLSKSGAET SWGPTTSIIA DYGVTERSIS QVATAAATTA  120
SLESLDCLLS ATNSNTDTTA SVEDDGISMI FTDYRNLWNN NNINGRTSAA SAVSSGESEN  180
NVSRSKEMHC PVNELDETVS QSSSELRYCH NYQTKCSDTT TTTTKPSSST LGSSRNDQIN  240
FKAGSSYINH FNLLQNADCS NTAREGVGYG FQLISEDLPK AKRPRSEKRS GSSNLNFQQP  300
SSSLSSSIEE PDPEAIAQMK EMIYRAAAFR PVNLGLEVVE KPKRKNVRIS TDPQTVAARQ  360
RRERISERIR VLQRLVPGGN KMDTASMLDE AANYLKFLRS QVKALENLGQ KIDSMNCPPT  420
NIAFSFNPAS FAMQTTHVPL QNPNHIHHSQ N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358363RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015866259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866259.10.0transcription factor bHLH87
RefseqXP_024928807.10.0transcription factor bHLH87
RefseqXP_024928813.10.0transcription factor bHLH87
RefseqXP_024928815.10.0transcription factor bHLH87
SwissprotQ8S3D25e-89BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A061GIV91e-151A0A061GIV9_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY270041e-151(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]