PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015865913.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 611aa    MW: 66883.5 Da    PI: 6.9678
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015865913.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-08497545348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
   XP_015865913.1 497 AWTLVEVMKLVEGVSKCGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 545
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.368490549IPR017930Myb domain
SuperFamilySSF466891.14E-15492558IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-12492552IPR009057Homeodomain-like
SMARTSM007171.2E-8494547IPR001005SANT/Myb domain
CDDcd116602.53E-19496546No hitNo description
PfamPF002493.8E-6497545IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
METVVVVEGN DEEKYEDSGV EKGSTSLSSL KEVADPVVYK LVRVEGDGRL VPATDDEVME  60
VEDFLIDDKT EVNVTTDTGK TEECISSGGP SCLKLQLESS EGLPDSENKK VDAEQLTSRL  120
EEIVPSSALI LNGNHNNEPR SIGECSKPAD EPGESRSPAS GACASSKPDF SKLKGEICLD  180
NLSIRELHEL FKATFGRETT VKDKLWLKRR IAMGLTNSCD VATTTFTIKE NKLVKGMEES  240
CKNADGTLTG PSMVEAMDIS CKNSPTSHCS QIEDHQIVSG KSVRNNRVEF DGGSDDLQTE  300
QRAAKRVRKP TRRYIEELSE VESRDCSPKV SSSAKNIGSE QTSPKSWVKP IRKVSSNERP  360
VVTRLDSLGG SGVQVPYVSR VRRSRPRKNI MALMFHPSGM GMGMAAKVVK KTLMVHGSQP  420
DSECLDQVLK PRSASEQFQP LLTPEDEKDH QCSVIDTIHL GKNLGLKQSD SSEEASDDNL  480
ATVPTAKGGM RRKHHRAWTL VEVMKLVEGV SKCGAGRWSE IKRLAFASYS YRTSVDLKDK  540
WRNLLKASLA QTPPDDGINS RKHASVPIPA PILLRVRELA EMHAQAPPKL GSSRLAGVGG  600
RSVHETRSGY L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381387RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015865913.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865913.10.0uncharacterized protein LOC107403503 isoform X3
TrEMBLA0A314XXD50.0A0A314XXD5_PRUYE; Uncharacterized protein
STRINGEMJ183470.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-118TRF-like 6