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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015865905.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 625aa MW: 68806.9 Da PI: 7.1401 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.2 | 3.9e-08 | 511 | 559 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G g+W+ I r Rt ++k++w+++l XP_015865905.1 511 AWTLVEVMKLVEGVSKCGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 559 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.368 | 504 | 563 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-12 | 506 | 566 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-8 | 508 | 561 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.22E-15 | 510 | 569 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.09E-19 | 510 | 560 | No hit | No description |
Pfam | PF00249 | 3.9E-6 | 511 | 559 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MVEGDGRLVP ATDDEVMEVE DFLIDDKTEV NVTTDTGKTE ECISSGGPSC LKLQLESSEG 60 LPDSENKKVD AEQLTSRLEY IEEMLQKVKQ EERLRLACGS PDDSSAFMNV DRQCSDPHDK 120 LLFIDVKLQS EIPLQEIVPS SALILNGNHN NEPRSIGECS KPADEPGESR SPASGACASS 180 KPDFSKLKGE ICLDNLSIRE LHELFKATFG RETTVKDKLW LKRRIAMGLT NSCDVATTTF 240 TIKENKLVKG MEESCKNADG TLTGPSMVEA MDISCKNSPT SHCSQIEDHQ IVSGKSVRNN 300 RVEFDGGSDD LQTEQRAAKR VRKPTRRYIE ELSEVESRDC SPKVSSSAKN IGSEQTSPKS 360 WVKPIRKVSS NERPVVTRLD SLGGSGVQVP YVSRVRRSRP RKNIMALMFH PSGMGMGMAA 420 KVVKKTLMVH GSQPDSECLD QVLKPRSASE QFQPLLTPED EKDHQCSVID TIHLGKNLGL 480 KQSDSSEEAS DDNLATVPTA KGGMRRKHHR AWTLVEVMKL VEGVSKCGAG RWSEIKRLAF 540 ASYSYRTSVD LKDKWRNLLK ASLAQTPPDD GINSRKHASV PIPAPILLRV RELAEMHAQA 600 PPKLGSSRLA GVGGRSVHET RSGYL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 395 | 401 | RRSRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015865905.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015865905.1 | 0.0 | uncharacterized protein LOC107403503 isoform X2 | ||||
TrEMBL | A0A251PV34 | 0.0 | A0A251PV34_PRUPE; Uncharacterized protein | ||||
STRING | XP_008228212.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-123 | TRF-like 6 |