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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015865899.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 637aa MW: 70251.7 Da PI: 7.9362 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 523 | 571 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G g+W+ I r Rt ++k++w+++l XP_015865899.1 523 AWTLVEVMKLVEGVSKCGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 571 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.368 | 516 | 575 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-12 | 518 | 578 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-15 | 518 | 584 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-8 | 520 | 573 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.84E-19 | 522 | 572 | No hit | No description |
Pfam | PF00249 | 4.0E-6 | 523 | 571 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MMKRSMRTVG LRKVEGDGRL VPATDDEVME VEDFLIDDKT EVNVTTDTGK TEECISSGGP 60 SCLKLQLESS EGLPDSENKK VDAEQLTSRL EYIEEMLQKV KQEERLRLAC GSPDDSSAFM 120 NVDRQCSDPH DKLLFIDVKL QSEIPLQEIV PSSALILNGN HNNEPRSIGE CSKPADEPGE 180 SRSPASGACA SSKPDFSKLK GEICLDNLSI RELHELFKAT FGRETTVKDK LWLKRRIAMG 240 LTNSCDVATT TFTIKENKLV KGMEESCKNA DGTLTGPSMV EAMDISCKNS PTSHCSQIED 300 HQIVSGKSVR NNRVEFDGGS DDLQTEQRAA KRVRKPTRRY IEELSEVESR DCSPKVSSSA 360 KNIGSEQTSP KSWVKPIRKV SSNERPVVTR LDSLGGSGVQ VPYVSRVRRS RPRKNIMALM 420 FHPSGMGMGM AAKVVKKTLM VHGSQPDSEC LDQVLKPRSA SEQFQPLLTP EDEKDHQCSV 480 IDTIHLGKNL GLKQSDSSEE ASDDNLATVP TAKGGMRRKH HRAWTLVEVM KLVEGVSKCG 540 AGRWSEIKRL AFASYSYRTS VDLKDKWRNL LKASLAQTPP DDGINSRKHA SVPIPAPILL 600 RVRELAEMHA QAPPKLGSSR LAGVGGRSVH ETRSGYL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 407 | 413 | RRSRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015865899.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015865884.1 | 0.0 | uncharacterized protein LOC107403503 isoform X1 | ||||
TrEMBL | A0A251PV34 | 0.0 | A0A251PV34_PRUPE; Uncharacterized protein | ||||
STRING | XP_008228212.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-124 | TRF-like 6 |