PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015865893.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 637aa    MW: 70251.7 Da    PI: 7.9362
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015865893.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-08523571348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
   XP_015865893.1 523 AWTLVEVMKLVEGVSKCGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 571
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.368516575IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-12518578IPR009057Homeodomain-like
SuperFamilySSF466891.22E-15518584IPR009057Homeodomain-like
SMARTSM007171.2E-8520573IPR001005SANT/Myb domain
CDDcd116602.84E-19522572No hitNo description
PfamPF002494.0E-6523571IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MMKRSMRTVG LRKVEGDGRL VPATDDEVME VEDFLIDDKT EVNVTTDTGK TEECISSGGP  60
SCLKLQLESS EGLPDSENKK VDAEQLTSRL EYIEEMLQKV KQEERLRLAC GSPDDSSAFM  120
NVDRQCSDPH DKLLFIDVKL QSEIPLQEIV PSSALILNGN HNNEPRSIGE CSKPADEPGE  180
SRSPASGACA SSKPDFSKLK GEICLDNLSI RELHELFKAT FGRETTVKDK LWLKRRIAMG  240
LTNSCDVATT TFTIKENKLV KGMEESCKNA DGTLTGPSMV EAMDISCKNS PTSHCSQIED  300
HQIVSGKSVR NNRVEFDGGS DDLQTEQRAA KRVRKPTRRY IEELSEVESR DCSPKVSSSA  360
KNIGSEQTSP KSWVKPIRKV SSNERPVVTR LDSLGGSGVQ VPYVSRVRRS RPRKNIMALM  420
FHPSGMGMGM AAKVVKKTLM VHGSQPDSEC LDQVLKPRSA SEQFQPLLTP EDEKDHQCSV  480
IDTIHLGKNL GLKQSDSSEE ASDDNLATVP TAKGGMRRKH HRAWTLVEVM KLVEGVSKCG  540
AGRWSEIKRL AFASYSYRTS VDLKDKWRNL LKASLAQTPP DDGINSRKHA SVPIPAPILL  600
RVRELAEMHA QAPPKLGSSR LAGVGGRSVH ETRSGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1407413RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015865893.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865884.10.0uncharacterized protein LOC107403503 isoform X1
TrEMBLA0A251PV340.0A0A251PV34_PRUPE; Uncharacterized protein
STRINGXP_008228212.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-124TRF-like 6