PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015865884.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 667aa    MW: 73373.9 Da    PI: 6.5193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015865884.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.2e-08553601348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
   XP_015865884.1 553 AWTLVEVMKLVEGVSKCGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 601
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.368546605IPR017930Myb domain
SuperFamilySSF466891.3E-15548614IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-12548608IPR009057Homeodomain-like
SMARTSM007171.2E-8550603IPR001005SANT/Myb domain
CDDcd116602.56E-19552602No hitNo description
PfamPF002494.3E-6553601IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
METVVVVEGN DEEKYEDSGV EKGSTSLSSL KEVADPVVYK LVRVEGDGRL VPATDDEVME  60
VEDFLIDDKT EVNVTTDTGK TEECISSGGP SCLKLQLESS EGLPDSENKK VDAEQLTSRL  120
EYIEEMLQKV KQEERLRLAC GSPDDSSAFM NVDRQCSDPH DKLLFIDVKL QSEIPLQEIV  180
PSSALILNGN HNNEPRSIGE CSKPADEPGE SRSPASGACA SSKPDFSKLK GEICLDNLSI  240
RELHELFKAT FGRETTVKDK LWLKRRIAMG LTNSCDVATT TFTIKENKLV KGMEESCKNA  300
DGTLTGPSMV EAMDISCKNS PTSHCSQIED HQIVSGKSVR NNRVEFDGGS DDLQTEQRAA  360
KRVRKPTRRY IEELSEVESR DCSPKVSSSA KNIGSEQTSP KSWVKPIRKV SSNERPVVTR  420
LDSLGGSGVQ VPYVSRVRRS RPRKNIMALM FHPSGMGMGM AAKVVKKTLM VHGSQPDSEC  480
LDQVLKPRSA SEQFQPLLTP EDEKDHQCSV IDTIHLGKNL GLKQSDSSEE ASDDNLATVP  540
TAKGGMRRKH HRAWTLVEVM KLVEGVSKCG AGRWSEIKRL AFASYSYRTS VDLKDKWRNL  600
LKASLAQTPP DDGINSRKHA SVPIPAPILL RVRELAEMHA QAPPKLGSSR LAGVGGRSVH  660
ETRSGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1437443RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015865884.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865884.10.0uncharacterized protein LOC107403503 isoform X1
TrEMBLA0A251PV340.0A0A251PV34_PRUPE; Uncharacterized protein
STRINGXP_008228212.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-132TRF-like 6