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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015865766.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | TCP | ||||||||
Protein Properties | Length: 590aa MW: 61784.2 Da PI: 7.9232 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.2 | 2.9e-38 | 182 | 285 | 3 | 112 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG ++d++tieWLlqqa pai+++tgt++++a+++ + s +ss+s+ s++ + XP_015865766.1 182 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGNKSDGETIEWLLQQAGPAIIAATGTGTIPANFStLNISLRSSGSTLSAP-------P 269 5699****************************************************************9997777777777743333.......4 PP TCP 97 skksqksaasalnlak 112 sk++++s + +l+la+ XP_015865766.1 270 SKSAPHSFHGTLALAH 285 4444444444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-37 | 186 | 387 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.568 | 187 | 241 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MDLADLQTNN SNNNNNNKQS GNTNTPHHHH PHHHQQQKQS SSSSSQFVVP FDGRSSAGGG 60 PSSQGGPPFM GSISIQAGLT TTHHHAHAHP HAHAASSTPA TAPSSSSSSS SSSSSSSSSS 120 STSASTAPPH LVDASLAIAT RSDAHPSTRP APLLDSSKKN QQQQQQQLSI SPTGAAAASN 180 PPVKRSTKDR HTKVDGRGRR IRMPATCAAR VFQLTRELGN KSDGETIEWL LQQAGPAIIA 240 ATGTGTIPAN FSTLNISLRS SGSTLSAPPS KSAPHSFHGT LALAHHPHYD EGFAHAGLLG 300 FHQHQPPLMT ADQIAEVLPS GGGDGGGGES TTDNYMRKRF REDLFKEESQ GQAEASAGGG 360 GGSPSSNKAF KSGLQLPKQQ QQQQQQQQQQ EAAAGGASSG LLRPSNIMPA TAMWAVTPAP 420 TSGAGSTFWM LPVTAGAGGP STVGAGTSGA GPSEQPHMWT FPTTPASSHG NTLQAPLHFM 480 PRFNLPHHTG NLEFQGGRGG NHPLQLGSML MQQQQQQQQQ PSQQLGLGVS ESNLGMLAAL 540 NAYSRGGLNI NSDHHQNHPL EHHHHQHQQQ QQQQQPQTTD SGDEDPNSSQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015865766.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024923981.1 | 0.0 | transcription factor TCP8-like | ||||
Refseq | XP_024923982.1 | 0.0 | transcription factor TCP8-like | ||||
Refseq | XP_024923983.1 | 0.0 | transcription factor TCP8-like | ||||
Refseq | XP_024923984.1 | 0.0 | transcription factor TCP8-like | ||||
Refseq | XP_024923985.1 | 0.0 | transcription factor TCP8-like | ||||
TrEMBL | A0A2P5BJ32 | 0.0 | A0A2P5BJ32_PARAD; TCP transcription factor | ||||
STRING | EOX97160 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 6e-53 | TCP family protein |