PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013906482.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C2H2
Protein Properties Length: 991aa    MW: 106336 Da    PI: 9.2721
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013906482.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0007993112221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C+ Cg s+s+  nL++H+ 
  XP_013906482.1  93 SCGLCGISCSSAFNLQQHLE 112
                     7*****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.1289123IPR003604Zinc finger, U1-type
SuperFamilySSF576671.79E-691121No hitNo description
SMARTSM003550.792116IPR015880Zinc finger, C2H2-like
PfamPF128741.3E-593116No hitNo description
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SMARTSM004510.068124158IPR003604Zinc finger, U1-type
SMARTSM0035562127151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.40.50.3001.5E-35463587IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.51E-56470560IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF136041.1E-14472670No hitNo description
SMARTSM003820.0035489682IPR003593AAA+ ATPase domain
CDDcd000467.00E-6494540No hitNo description
SuperFamilySSF525401.51E-56597899IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.5E-35619731IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF130875.4E-44676886No hitNo description
Gene3DG3DSA:3.40.50.3003.3E-7756889IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009616Biological Processvirus induced gene silencing
GO:0035194Biological Processposttranscriptional gene silencing by RNA
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 991 aa     Download sequence    Send to blast
MACPGQEDAC AAALRKLCYE AQLAHPDKPG ASLPAALGAI GQLLKRKTYS GLKTFVRNQR  60
PHEFAVINLK KGQYVACLTL PAAGAAGNAG SLSCGLCGIS CSSAFNLQQH LEGKAHQAKA  120
ASEEGRLWCS LCSTRSPNAA AQAAHVRGAR HKAALLQRSN AAGGALGASQ EGVEVALQPA  180
EITGLAPGQV KVASLLITNS GHAVVRVAAV SQMRAVPGVV VSSMADGQCL WGLGYIYSLL  240
VVDLGSFCVS CLLSAACDGG DPIARELAPS APYAPKRPPP NEARLEIVPG EKPARHRSSW  300
ARPPGAHEVP DWLRSALRAG ELWRVQEELD KAANGAELHA KRMALMVWLE ELQQERDVRQ  360
YDIDGAQLES TPGGRLLALK VPGLAESRPS VMLGDRLYVR RSDGERREWE GCRVRFSIKR  420
SSFVFMHEAL SLVQYRQLPE QLLLPMGVQC EVAHRVATHP AKQAVAWVNP FLNQEQRGAV  480
EAVLRGGHAP APYLVFGPPG TGKTSTLVEA AVQVLRTQPF ARVLLLAPSN TAADQLALRL  540
MGPAAGRPKS EMLRVNAYQR PSSDVPREVM DISTYVDQIG AGSGYFKLPE TAQVVSKRAV  600
VATCVMASKI YAQGLFSGWF THIFMDEAGH AEEPLALAGI AGLAGPNTRV VLVGDPRQLG  660
PIIHSRLARD AGLGTSWMER LLGRAPYAPD AQGCYDARFI TQLVRNYRSH PDLLTLPSTL  720
FYGGRLVACA DPVVTHSVLQ SGFELPNQRF PLLFHGLVGK DEREGNSPSW FNSMEVLQVV  780
RYIEKLRAVR RNPISTADIG VVTPYHKQVQ KLRRAFSSKG MDGVMVGSVE QFQGQERKVI  840
IISTVRSTSE YVDFDLKHRL GFVRNEKRFN VAVTRAKALV IVVGNPEVLI TDDSWAALLR  900
LAVRNNAYTG SAPLPGGLEA ERGGGAPQAA GGAGEQDAGM MSSLARMMRG LAIQGSGRWG  960
SAAAAAEADE MVLAGDGAGA RVEGLPMRRL E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2xzl_A5e-41472899361777ATP-DEPENDENT HELICASE NAM7
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013906482.10.0hypothetical protein MNEG_0492
TrEMBLA0A0D2KB630.0A0A0D2KB63_9CHLO; Uncharacterized protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]