PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013904626.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | C3H | ||||||||
Protein Properties | Length: 1342aa MW: 142070 Da PI: 7.0116 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.6e-07 | 1260 | 1284 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f+ +tGtCky C+F H++ XP_013904626.1 1260 QQSCDFYVKTGTCKYAQDCCFDHPE 1284 566********************96 PP | |||||||
2 | zf-CCCH | 30 | 9e-10 | 1302 | 1325 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C f+++t++Ck+G+ CkF+H++ XP_013904626.1 1302 PVCAFYLKTHQCKFGAACKFHHPR 1325 79********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00564 | 150 | 33 | 66 | IPR018391 | Pyrrolo-quinoline quinone beta-propeller repeat |
SuperFamily | SSF50998 | 1.02E-11 | 40 | 190 | IPR011047 | Quinoprotein alcohol dehydrogenase-like superfamily |
Gene3D | G3DSA:2.140.10.10 | 2.6E-8 | 46 | 204 | IPR027295 | Quinoprotein alcohol dehydrogenase-like domain |
SMART | SM00564 | 7.4E-4 | 122 | 154 | IPR018391 | Pyrrolo-quinoline quinone beta-propeller repeat |
SuperFamily | SSF50998 | 1.02E-11 | 230 | 272 | IPR011047 | Quinoprotein alcohol dehydrogenase-like superfamily |
SMART | SM00564 | 430 | 240 | 271 | IPR018391 | Pyrrolo-quinoline quinone beta-propeller repeat |
SMART | SM00564 | 730 | 307 | 337 | IPR018391 | Pyrrolo-quinoline quinone beta-propeller repeat |
Gene3D | G3DSA:3.30.200.20 | 2.0E-8 | 634 | 686 | No hit | No description |
PROSITE profile | PS50011 | 31.453 | 695 | 956 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 5.8E-25 | 702 | 956 | IPR000719 | Protein kinase domain |
SuperFamily | SSF56112 | 2.05E-45 | 725 | 966 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 2.0E-8 | 728 | 808 | No hit | No description |
Pfam | PF00069 | 8.8E-33 | 731 | 955 | IPR000719 | Protein kinase domain |
Gene3D | G3DSA:1.10.510.10 | 1.2E-35 | 809 | 982 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 816 | 828 | IPR008271 | Serine/threonine-protein kinase, active site |
PROSITE profile | PS51392 | 35.641 | 959 | 1092 | IPR010513 | KEN domain |
CDD | cd10422 | 4.40E-53 | 960 | 1089 | No hit | No description |
Pfam | PF06479 | 5.5E-38 | 962 | 1089 | IPR010513 | KEN domain |
SMART | SM00580 | 9.7E-15 | 1023 | 1077 | IPR018997 | PUB domain |
SMART | SM00356 | 0.0034 | 1257 | 1284 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.192 | 1257 | 1285 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.02 | 1298 | 1325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.169 | 1298 | 1326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-7 | 1301 | 1325 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006397 | Biological Process | mRNA processing | ||||
GO:0006987 | Biological Process | activation of signaling protein activity involved in unfolded protein response | ||||
GO:0008380 | Biological Process | RNA splicing | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0046777 | Biological Process | protein autophosphorylation | ||||
GO:0090501 | Biological Process | RNA phosphodiester bond hydrolysis | ||||
GO:0042406 | Cellular Component | extrinsic component of endoplasmic reticulum membrane | ||||
GO:0004521 | Molecular Function | endoribonuclease activity | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1342 aa Download sequence Send to blast |
MYRYLRWVLG RAPLRACGAP GLPLLLLLLL CAIPGGGGGA PLIVTLLDGV VVGVDRDAGR 60 VLWTFDSGAP LVSAKQSPQG SGFNVFPGVD GGLYAYHGVS KHRTPGLERL PLSLPELVQA 120 APSLTADGSL IVGRRDSRVF VLDRHTGQQL ATLTADSTDQ SGRLAWSGLA SNEGLESLLL 180 VGRQDFIVKS LRVDSQAEMW NATFARMSLL QPGGSAAGVR SFLEGAVGAG AEASLPARPG 240 EGPDAVRLVV GADNSLQAFD GSTGFRKWGI DFASTNLLVP QDYGARPSLP YGPQRKPAGV 300 SAKIKGNLAG GTSVLVGALR GSLYALPADH IMLDALAPAP AALPPPEGRK CTECAPRPWP 360 GALGPLTPLG PGAGVSSGDE DTDSGAGGDT LEDGGGECRA EDYGALVVQD EDASRARSLV 420 PLEPSDEGVA EGLGGLVCPH LPLGLYQLSD WGEGAPALPW LPDAGQPAGK ALTWGAWLVG 480 NAVQLLLMAL ATLAAVVAVL GWLLYVRPTS RLATQQEAAS ADAATPAAAK RAPGKNKQGK 540 AGKSKQAAVL VQHNGSHQRD PLQVESGKPT APRTEEQRPP SPRRHQQHPL QPAREEQTVP 600 SPMQVNGAQQ YSQAPEQQAS IQLVRQQQQE LQQQQQQQQQ QQQRQQQQQQ QVVAQGHEDS 660 QQQPQQQQLN QTVVQGQHPQ EQQQSSSNHS SDSVRRGNAS DGAGLSSDTS RSYVDESGAV 720 IIGRLRFYDL ARKEIQVLIV SDEHPNVVRC FAMEEDREFV YLALEKCRCT LSDWVSSAEG 780 RAALVGGGGP VGSSPQAMAL LSDVGAGLAA LHARAIVHRD LKPHNVLITD SCRAKLSDMG 840 LSKQLVAEQS SFESHGAGGS SGWQAPEQLI ARSGGAVRQT RSMDIFSLGC VMHYCLTGGL 900 HPFGGNFERD TNIMRGQPNL SALSSSPEAS NLVGAMLSKN PAARPAMSGV LAHPFWWSVE 960 QRLNFLIDVS DRVEFEDREP DQSLLSALES FRPAALGPAP NWAASVDAEL IVNLGKYRRY 1020 DYTSLRDLLR VVRNKKNHFR EMPEALQRTM GPVPDGYFRF FNSRFPDLLM GVFVFAATHL 1080 AGDAHLGKYW PEGTVCLQPF CKRFQQLARA TAAAAANGGV RGGGLQQRGA VAAKRQQGDL 1140 SRLSVAGSVS KLPPLPPVVS ITAASPLTPG AGVPSSYAAA LAERAGLAEP LAPAASSPPQ 1200 SVALADRGAG SAASNGSLDN GSSSSSSMVA AGGPLVVVGY EPDDGETPLH WPPFPRRPGQ 1260 QSCDFYVKTG TCKYAQDCCF DHPEEFAVPL TDLQLPFRAS EPVCAFYLKT HQCKFGAACK 1320 FHHPRLRAIY AGSAAMAAVP VT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3fbv_B | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_C | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_D | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_E | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_F | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_G | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_H | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_I | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_J | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_K | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_L | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_M | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_N | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_A | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_B | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_C | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_D | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_E | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_F | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_G | 3e-85 | 727 | 1089 | 69 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013904626.1 | 0.0 | serine/threonine-protein kinase/endoribonuclease IRE1 | ||||
TrEMBL | A0A0D2MZ90 | 0.0 | A0A0D2MZ90_9CHLO; Serine/threonine-protein kinase/endoribonuclease IRE1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2824 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 3e-20 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Entrez Gene | 25735234 |
Publications ? help Back to Top | |||
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