PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013904626.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 1342aa    MW: 142070 Da    PI: 7.0116
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013904626.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-0712601284327
                      S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    3 telCrffartGtCkyGdrCkFaHgp 27  
                      +  C+f+ +tGtCky   C+F H++
  XP_013904626.1 1260 QQSCDFYVKTGTCKYAQDCCFDHPE 1284
                      566********************96 PP
2zf-CCCH309e-1013021325427
                      ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                      + C f+++t++Ck+G+ CkF+H++
  XP_013904626.1 1302 PVCAFYLKTHQCKFGAACKFHHPR 1325
                      79********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005641503366IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SuperFamilySSF509981.02E-1140190IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.140.10.102.6E-846204IPR027295Quinoprotein alcohol dehydrogenase-like domain
SMARTSM005647.4E-4122154IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SuperFamilySSF509981.02E-11230272IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
SMARTSM00564430240271IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM00564730307337IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
Gene3DG3DSA:3.30.200.202.0E-8634686No hitNo description
PROSITE profilePS5001131.453695956IPR000719Protein kinase domain
SMARTSM002205.8E-25702956IPR000719Protein kinase domain
SuperFamilySSF561122.05E-45725966IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.202.0E-8728808No hitNo description
PfamPF000698.8E-33731955IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.101.2E-35809982No hitNo description
PROSITE patternPS001080816828IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5139235.6419591092IPR010513KEN domain
CDDcd104224.40E-539601089No hitNo description
PfamPF064795.5E-389621089IPR010513KEN domain
SMARTSM005809.7E-1510231077IPR018997PUB domain
SMARTSM003560.003412571284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.19212571285IPR000571Zinc finger, CCCH-type
SMARTSM003560.0212981325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.16912981326IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-713011325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006397Biological ProcessmRNA processing
GO:0006987Biological Processactivation of signaling protein activity involved in unfolded protein response
GO:0008380Biological ProcessRNA splicing
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0046777Biological Processprotein autophosphorylation
GO:0090501Biological ProcessRNA phosphodiester bond hydrolysis
GO:0042406Cellular Componentextrinsic component of endoplasmic reticulum membrane
GO:0004521Molecular Functionendoribonuclease activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1342 aa     Download sequence    Send to blast
MYRYLRWVLG RAPLRACGAP GLPLLLLLLL CAIPGGGGGA PLIVTLLDGV VVGVDRDAGR  60
VLWTFDSGAP LVSAKQSPQG SGFNVFPGVD GGLYAYHGVS KHRTPGLERL PLSLPELVQA  120
APSLTADGSL IVGRRDSRVF VLDRHTGQQL ATLTADSTDQ SGRLAWSGLA SNEGLESLLL  180
VGRQDFIVKS LRVDSQAEMW NATFARMSLL QPGGSAAGVR SFLEGAVGAG AEASLPARPG  240
EGPDAVRLVV GADNSLQAFD GSTGFRKWGI DFASTNLLVP QDYGARPSLP YGPQRKPAGV  300
SAKIKGNLAG GTSVLVGALR GSLYALPADH IMLDALAPAP AALPPPEGRK CTECAPRPWP  360
GALGPLTPLG PGAGVSSGDE DTDSGAGGDT LEDGGGECRA EDYGALVVQD EDASRARSLV  420
PLEPSDEGVA EGLGGLVCPH LPLGLYQLSD WGEGAPALPW LPDAGQPAGK ALTWGAWLVG  480
NAVQLLLMAL ATLAAVVAVL GWLLYVRPTS RLATQQEAAS ADAATPAAAK RAPGKNKQGK  540
AGKSKQAAVL VQHNGSHQRD PLQVESGKPT APRTEEQRPP SPRRHQQHPL QPAREEQTVP  600
SPMQVNGAQQ YSQAPEQQAS IQLVRQQQQE LQQQQQQQQQ QQQRQQQQQQ QVVAQGHEDS  660
QQQPQQQQLN QTVVQGQHPQ EQQQSSSNHS SDSVRRGNAS DGAGLSSDTS RSYVDESGAV  720
IIGRLRFYDL ARKEIQVLIV SDEHPNVVRC FAMEEDREFV YLALEKCRCT LSDWVSSAEG  780
RAALVGGGGP VGSSPQAMAL LSDVGAGLAA LHARAIVHRD LKPHNVLITD SCRAKLSDMG  840
LSKQLVAEQS SFESHGAGGS SGWQAPEQLI ARSGGAVRQT RSMDIFSLGC VMHYCLTGGL  900
HPFGGNFERD TNIMRGQPNL SALSSSPEAS NLVGAMLSKN PAARPAMSGV LAHPFWWSVE  960
QRLNFLIDVS DRVEFEDREP DQSLLSALES FRPAALGPAP NWAASVDAEL IVNLGKYRRY  1020
DYTSLRDLLR VVRNKKNHFR EMPEALQRTM GPVPDGYFRF FNSRFPDLLM GVFVFAATHL  1080
AGDAHLGKYW PEGTVCLQPF CKRFQQLARA TAAAAANGGV RGGGLQQRGA VAAKRQQGDL  1140
SRLSVAGSVS KLPPLPPVVS ITAASPLTPG AGVPSSYAAA LAERAGLAEP LAPAASSPPQ  1200
SVALADRGAG SAASNGSLDN GSSSSSSMVA AGGPLVVVGY EPDDGETPLH WPPFPRRPGQ  1260
QSCDFYVKTG TCKYAQDCCF DHPEEFAVPL TDLQLPFRAS EPVCAFYLKT HQCKFGAACK  1320
FHHPRLRAIY AGSAAMAAVP VT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fbv_B3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_C3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_D3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_E3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_F3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_G3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_H3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_I3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_J3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_K3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_L3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_M3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_N3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_A3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_B3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_C3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_D3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_E3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_F3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_G3e-85727108969445Serine/threonine-protein kinase/endoribonuclease IRE1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013904626.10.0serine/threonine-protein kinase/endoribonuclease IRE1
TrEMBLA0A0D2MZ900.0A0A0D2MZ90_9CHLO; Serine/threonine-protein kinase/endoribonuclease IRE1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28241112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-20floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]