PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.5	2.3e-08	61	83	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr++ rtG C G+ C+FaH+ XP_013903789.1 61 PLCRHWGRTGSCLQGAACRFAHP 83 8*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.2E-4	57	84	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.22	57	85	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-5	59	85	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-5	61	83	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-6	62	83	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MTKAVALHAA APEPLPSRFS QGDQQENAQQ PEQQQEEQQQ QEEPQQSHQQ PQQTQHGPQA 60 PLCRHWGRTG SCLQGAACRF AHPADVVPMD APRRRHWGGR RATVRNRSRA TAFRRHLIDA 120 FGRDLLRSGS GVLDVAGGKG EISFQLFNLN SIPSTVVDPR PLRLKQFERR AKLGIYHNTG 180 PYASYTDVPL EDLSVRGGAP PGHARIFLDM PLVEALGRLS AARRVRLEGR EGVEGAAGDE 240 AATCEVVGDG GSRPGLGEQQ QQQQQEQQGQ QEQQQQQQLC DGALGTQESA AGRGGRAACT 300 SRGPSCGGGD DSDEEEATDC EPDWSDEAAC LARVRQLLSA SLQRAAAVEW TTHGLQEHEG 360 EAVAGTARRR GKTAADGRHS AGASDEEDDE ENEEAEALQW LLQGREGLGA AGEPLRSCKL 420 DETTASARGN GGGSAIPEPS SAIAAENSAA TEDAPGDPCA QQALDALIDR LLSCSCVAAL 480 HPDAATEPAV RLALALCKPW AVVPCCVYAA QFPGRRLASG AAVRTHQELV AYLLELAEGT 540 GMAARAAPLP FEGKNVVVWS APAPTDELVE GAAGGLANLK VSPCNVK

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MTKAVALHAA APEPLPSRFS QGDQQENAQQ PEQQQEEQQQ QEEPQQSHQQ PQQTQHGPQA  60
PLCRHWGRTG SCLQGAACRF AHPADVVPMD APRRRHWGGR RATVRNRSRA TAFRRHLIDA  120
FGRDLLRSGS GVLDVAGGKG EISFQLFNLN SIPSTVVDPR PLRLKQFERR AKLGIYHNTG  180
PYASYTDVPL EDLSVRGGAP PGHARIFLDM PLVEALGRLS AARRVRLEGR EGVEGAAGDE  240
AATCEVVGDG GSRPGLGEQQ QQQQQEQQGQ QEQQQQQQLC DGALGTQESA AGRGGRAACT  300
SRGPSCGGGD DSDEEEATDC EPDWSDEAAC LARVRQLLSA SLQRAAAVEW TTHGLQEHEG  360
EAVAGTARRR GKTAADGRHS AGASDEEDDE ENEEAEALQW LLQGREGLGA AGEPLRSCKL  420
DETTASARGN GGGSAIPEPS SAIAAENSAA TEDAPGDPCA QQALDALIDR LLSCSCVAAL  480
HPDAATEPAV RLALALCKPW AVVPCCVYAA QFPGRRLASG AAVRTHQELV AYLLELAEGT  540
GMAARAAPLP FEGKNVVVWS APAPTDELVE GAAGGLANLK VSPCNVK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013903789.1	0.0	hypothetical protein MNEG_3187
TrEMBL	A0A0D2MQ32	0.0	A0A0D2MQ32_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP348	8	11

Link Out ? help Back to Top
Entrez Gene	25736065

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]