PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013899654.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family bZIP
Protein Properties Length: 666aa    MW: 69305.8 Da    PI: 7.4697
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013899654.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.61.2e-12302360361
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                     e++r+rr++kNR+ A rsR+RKk++ +e + + ++Le+eN aL+ +l  l++e a lk+
  XP_013899654.1 302 ERRRQRRLAKNRVTAARSRERKKEQWAETAARLAALEQENAALRAQLRGLSEENAGLKA 360
                     789***************************************************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.2E-14298362No hitNo description
SMARTSM003381.3E-12299364IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.634302365IPR004827Basic-leucine zipper domain
PfamPF001701.5E-10302360IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.13E-8304362No hitNo description
CDDcd147041.51E-16305356No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MDTDAIEQDL FWQGLGSPPQ LLDTDDALVP DLLALLSADT TLDNAAACDA DTPQLSAPFL  60
VRATSDHSTD GSAHMGGDCV RSSSSAAATA ESKASAGADA CAPVAAASCF FHHNAVVTTT  120
HAALAPQLSA PVFGSCVLPP VVALPLVLTP HIGQQQLPIP CGDIKQPQQQ QQQQQLCQPA  180
ASPSESSDLT HISAGGSAAD GLASPTASLA AAPIPVPAST GAKRKQQPAA RAAPAAKAAK  240
RRASAAAPSA AAAENDSDAD TSSDDDEDDG GSEQQPLTKA QLAALRRRAP EVNWRAISDP  300
AERRRQRRLA KNRVTAARSR ERKKEQWAET AARLAALEQE NAALRAQLRG LSEENAGLKA  360
RLASPYRGAG PADIPSAAPC GASRSYPEPA VLACLAIMHL VVLLAAPSGR AGCEGLGMIR  420
RAGRAAAACS GRVLTSSGFA RSRGSDGGGV AVAAKGEPQQ GGGPWWGTLP HGARPALPHQ  480
QQQGQQQQGQ QQQGQQGQQG PRMFAGGRRP TPWATGFSND EERELLWAGY SDLSEQLSQA  540
HSHNKTLQAE LESLHAAVQR LQQRQSPDSD NQQRNAARAA AGPWQAASFL LLFLMVINIA  600
GAIASFQLAA SSFTCFGWGA KQQVAKGLLV RPMMELVSSA VPAANSIVVI VFCIQAIKAA  660
WMCLAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301308ERRRQRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013899654.10.0hypothetical protein MNEG_7324
TrEMBLA0A0D2MBN60.0A0A0D2MBN6_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP577378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.11e-08basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]