PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013895914.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family MYB_related
Protein Properties Length: 543aa    MW: 53309 Da    PI: 10.4454
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013895914.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.7e-12461508347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      rW +eE + l+++v ++G+g+Wk+I +  g   ++Rt  ++k++w+++
   XP_013895914.1 461 RWQPEETDVLIKYVYEYGPGNWKAIIEVAGhllNNRTQVDLKDKWRNL 508
                      9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.948453513IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-12455508IPR009057Homeodomain-like
SMARTSM007173.2E-8458511IPR001005SANT/Myb domain
CDDcd116606.69E-14460510No hitNo description
PfamPF002496.3E-10461508IPR001005SANT/Myb domain
SuperFamilySSF466893.23E-14461513IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MRPSAGAHIV TADAPDEALS ALGYIYSLAI IRSAEFPASV DLRRLAPPAA LLDGLAALQL  60
ARHASGAARK GKAAVTADSV NAELSQLLAA ANLESIAGGK GLLARKALIL KEIGKTPSGS  120
KGGMTAAAAA DLAKRLAALF SADELQPALE AYAAAAWDAL GPTYLQASLA HEAEILSGGR  180
ERPAEGHAVY GPAAPAAAPS TAAASPAAQK AAPAARRGRN APTLAAPAPA AAAPAATTAA  240
AAPAPAAAAV PPAAVAAPAP AAKASKPPSA AAAAPAKAAS EPAAKPVSER RLRNGKTVQV  300
PAPKQEKGAP APASAPRAAA ASQPEAEPEA APGGKQKKGK AAKKSAAGGK GAKRPAADEA  360
AAGAAAEADV NARIAEQVVA EADAAAAAAA AAAAAAAAAG GSGGGSGSGR REDARGDPER  420
TGARAGATAA RRPSAGAAAP WPPTEPAPSG SPAPKRRRVV RWQPEETDVL IKYVYEYGPG  480
NWKAIIEVAG HLLNNRTQVD LKDKWRNLEN AGKVLRDRED QLRAAAAAAA APSAAQGQQD  540
GGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454458KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013895914.10.0hypothetical protein MNEG_11068
TrEMBLA0A0D2LZQ90.0A0A0D2LZQ9_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3956912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.13e-08MYB_related family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]