PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639829.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 344aa    MW: 38226.7 Da    PI: 6.3486
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639829.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.41.4e-53201461128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtd e++ +yLk+kv + +++   +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdke+++ 
  XP_013639829.1  20 LPPGFRFHPTDAEIIIHYLKEKVFNVRFTS-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRG 113
                     79*************************999.78***************8888899***************************************9 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     kg lvg+kktLvfy+grapkgekt+Wvmheyrl
  XP_013639829.1 114 KGCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 146
                     *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6016172IPR003441NAC domain
PROSITE profilePS5100556.9220171IPR003441NAC domain
PfamPF023651.1E-2721146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MLEEGGVVVN QGGDQEMVDL PPGFRFHPTD AEIIIHYLKE KVFNVRFTSA AIGQADLNKN  60
EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY WKATGKDKEI FRGKGCLVGM  120
KKTLVFYRGR APKGEKTNWV MHEYRLDGIY SYHNLPKTAS DEWVVCRVFH KNAPPPTTTA  180
TTTTTNQLTR IDSLDNIDHL LDFSSLPPLI DPGFLSQPGP SFSGAGQQHD FKLISHHPTT  240
VQINNTYPSA QTLTYPYNSV PNYGFGSGYG TGSGNNNNGM IKLEHSLVSV SQETGLSSDV  300
NTTATPEISS SYPGMVNTAA NAAMMDGNKT SYDDDDLGIF WDDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-501817315167NO APICAL MERISTEM PROTEIN
1ut4_B1e-501817315167NO APICAL MERISTEM PROTEIN
1ut7_A1e-501817315167NO APICAL MERISTEM PROTEIN
1ut7_B1e-501817315167NO APICAL MERISTEM PROTEIN
3swm_A2e-501817318170NAC domain-containing protein 19
3swm_B2e-501817318170NAC domain-containing protein 19
3swm_C2e-501817318170NAC domain-containing protein 19
3swm_D2e-501817318170NAC domain-containing protein 19
3swp_A2e-501817318170NAC domain-containing protein 19
3swp_B2e-501817318170NAC domain-containing protein 19
3swp_C2e-501817318170NAC domain-containing protein 19
3swp_D2e-501817318170NAC domain-containing protein 19
4dul_A1e-501817315167NAC domain-containing protein 19
4dul_B1e-501817315167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639829.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3616230.0AF361623.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds.
GenBankAY0818340.0AY081834.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639829.10.0PREDICTED: NAC domain-containing protein 100-like
RefseqXP_013742263.20.0NAC domain-containing protein 79-like
SwissprotQ9SQQ60.0NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A0D3AFP50.0A0A0D3AFP5_BRAOL; Uncharacterized protein
STRINGBo1g152230.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.10.0NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]