PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639669.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 453aa    MW: 50195.8 Da    PI: 4.8113
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639669.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.31.9e-36251172103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++e++sws+ +nsfvv++  ef+k+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F kg+k+ll++
  XP_013639669.1  25 FLSKTYDMVDDPSTDEVVSWSSGSNSFVVWNVPEFSKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLKGQKQLLKS 110
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k +
  XP_013639669.1 111 IIRRKPS 117
                     *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3819109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.9E-3421114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.5E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MGSVSESVPT ANSSTTVVMS SIPPFLSKTY DMVDDPSTDE VVSWSSGSNS FVVWNVPEFS  60
KQFLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LKGQKQLLKS IIRRKPSQVQ  120
PPQQPQVQHS SVGACVEVGK FGLDEEVERL QRDKNVLMQE LVRLRQQQQV TENHLQHVGQ  180
KVHVMEQRQQ QMMSFLAKAV QSPGFLNQFS QQSNNEGSQH MSESNKKRRL PVEDQKNSGG  240
SQGLNGLSRQ IVRYQSSMNE SSNSMLQQIN NMSNTHTNNH GSFLLGDVPN PNLSDNGSSS  300
NGPSGVVAFT DVSSNTTNQV LETNLPYPQP QADLLAPKQG AEGGSGSPSP DLVGCERDTG  360
ECLDPIMAVL DGSMMLETNE LLPGVQDSLW EQFFGESSGI GDSDELVPGS VDNELIMEQL  420
ELQPNLRNVL SNNQQMNHLT EQMGLLTSDA LRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-262011424129Heat shock factor protein 1
5d5v_B1e-262011424129Heat shock factor protein 1
5d5v_D1e-262011424129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639669.10.0PREDICTED: heat stress transcription factor A-1e
RefseqXP_013639709.10.0PREDICTED: heat stress transcription factor A-1e
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A0D3AFX50.0A0A0D3AFX5_BRAOL; Uncharacterized protein
STRINGBo1g155010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]