PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639656.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 538aa    MW: 61908.1 Da    PI: 8.6732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.4e-50161471128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka...eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                     +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePwd+++     +       +++wyfFs++dkky+tg+r+nrat +g+Wkatg
  XP_013639656.1  16 VPPGFRFHPTEEELLHYYLRKKVHSQKIDL-DVIREVDLNKLEPWDIQAnaeecR--IgltPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATG 107
                     69****************************.9***************95355542..1444567******************************* PP

             NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +dk ++s   + +gl+ktLvfykgrap+gek++W+mheyrl
  XP_013639656.1 108 RDKIIYS-CVRRIGLRKTLVFYKGRAPHGEKSEWIMHEYRL 147
                     ******9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5112154IPR003441NAC domain
PROSITE profilePS5100550.31216176IPR003441NAC domain
PfamPF023651.9E-2617147IPR003441NAC domain
PfamPF037329.8E-18342439IPR005162Retrotransposon gag domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MAENNVNLSI NGQSKVPPGF RFHPTEEELL HYYLRKKVHS QKIDLDVIRE VDLNKLEPWD  60
IQANAEECRI GLTPQNDWYF FSHKDKKYPT GTRTNRATVA GFWKATGRDK IIYSCVRRIG  120
LRKTLVFYKG RAPHGEKSEW IMHEYRLDDT PTSNGTGSGD IDGAASEWTE LRTVLVGMQT  180
ENTASIQQLG DTVSTLAARI EALTTTLTAH LDPQAQPVAQ SQPHHLLHLP PPPHHRPPRD  240
QHQLHPPQQH HPRAPPQHQQ QQHPHQRHNV QAEDEDDLHR RVYFEDLNQR HNYDDRWEKI  300
FRVDIPEFHG GLRGDELIDW LVPVEEIMEF KQVPFARCVP LVAMRFRAHA ATWWKQLKTT  360
RSRTGKTPIN SWDKLTKHLR QTFLPHNYER TMYTKLQNLR QGNRTVDEYA EEFALLLTSN  420
EINDSQIQLV SRFIGGLRQQ LQNSMAQFDP TTVGEAHRRA ASFEQQSRSS NWSQSSTRGR  480
SQDQPGSSTP ATTPKEAGDT TNPGTKPPIQ DEQQLRRSAR LNAIKCYACG ETGHRQSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-411315614151NO APICAL MERISTEM PROTEIN
1ut4_B1e-411315614151NO APICAL MERISTEM PROTEIN
1ut7_A1e-411315614151NO APICAL MERISTEM PROTEIN
1ut7_B1e-411315614151NO APICAL MERISTEM PROTEIN
4dul_A1e-411315614151NAC domain-containing protein 19
4dul_B1e-411315614151NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639656.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747551e-146KF974755.1 Brassica napus NAC transcription factor 12-1 (NAC12-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639656.10.0PREDICTED: uncharacterized protein LOC106344912
TrEMBLA0A0D3CDP41e-146A0A0D3CDP4_BRAOL; Uncharacterized protein
STRINGBo5g048910.11e-147(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32770.11e-101NAC domain containing protein 12