PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013639306.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 436aa MW: 47387.5 Da PI: 6.5714

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013639306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.5	1.8e-06	331	365	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ ++++ L++l+ + +K + a++L +A+eYIk L XP_013639306.1 331 KMSDRIAALQQLVSPF-----GKTDQASVLSEAIEYIKFL 365 899*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.144	316	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-4	325	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.26E-6	326	370	No hit	No description
SuperFamily	SSF47459	3.53E-11	329	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-11	330	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSIESGGSAA FHDKLHHSLA TDHHLQMIGL 60 GLSSQSHVDQ WNQSLLGDSK AETSFGVMLQ ENINLDATSN ANANTTSYQL QESDPSHHQA 120 LWRDPRINNS DFKPQLNMTS SNNRGFFLDH QFSPHGSSST DSSTVTCQGF SSDNPSNTLY 180 GPTATTPNSS SAMFHHHHHH QAAGFNMPGS SDQQPSRTHQ ASNLGYSQFG SSTGNYDQTA 240 LRFSNNATFW NPTAAGNVGP THHDASSNYF PALQPPQIHA PSFDEQPNGM SEIKDSSSSE 300 VKRVGGDQPA AKRAKSEATS PSPPLKVKKE KMSDRIAALQ QLVSPFGKTD QASVLSEAIE 360 YIKFLHQQVS ALSNPYMNSG ASLQHQQSDH PKELEVSKEP DLRSQGLCLV PVSSTFPVTH 420 DTTVDFWTTT FGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSIESGGSAA FHDKLHHSLA TDHHLQMIGL  60
GLSSQSHVDQ WNQSLLGDSK AETSFGVMLQ ENINLDATSN ANANTTSYQL QESDPSHHQA  120
LWRDPRINNS DFKPQLNMTS SNNRGFFLDH QFSPHGSSST DSSTVTCQGF SSDNPSNTLY  180
GPTATTPNSS SAMFHHHHHH QAAGFNMPGS SDQQPSRTHQ ASNLGYSQFG SSTGNYDQTA  240
LRFSNNATFW NPTAAGNVGP THHDASSNYF PALQPPQIHA PSFDEQPNGM SEIKDSSSSE  300
VKRVGGDQPA AKRAKSEATS PSPPLKVKKE KMSDRIAALQ QLVSPFGKTD QASVLSEAIE  360
YIKFLHQQVS ALSNPYMNSG ASLQHQQSDH PKELEVSKEP DLRSQGLCLV PVSSTFPVTH  420
DTTVDFWTTT FGGTFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013639306.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118054	0.0	AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBank	BT008580	0.0	BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013639306.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X2
Refseq	XP_013639696.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X2
Swissprot	Q8GXT3	0.0	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A078HX79	0.0	A0A078HX79_BRANA; BnaCnng10760D protein
TrEMBL	A0A0D3AC19	0.0	A0A0D3AC19_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FXX3	0.0	A0A3P6FXX3_BRAOL; Uncharacterized protein
STRING	Bo1g108770.1	0.0	(Brassica oleracea)
STRING	Bo1g108780.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]