PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013639210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 296aa MW: 33209.2 Da PI: 4.6608 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.2 | 3.9e-10 | 142 | 189 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE++RR+ +N++f L ++l + + +K +K +iL A++ +++L XP_013639210.1 142 TKACREKKRRELLNDKFMDLSSVLEPT---RTPKTDKPAILDDAIRVVNQL 189 6789**********************9...9****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.45E-12 | 131 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.83E-8 | 138 | 190 | No hit | No description |
PROSITE profile | PS50888 | 12.493 | 138 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-7 | 142 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-9 | 144 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-11 | 144 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MMYQSNEDDD DLLASLCFDQ SNGGEDPYGF IQTDQETLFP EFDVNLLPEE EQVCNIGDQF 60 DAFSGNLDSN GLGPFGGSSQ LDLGTHQVCS FRGTATHVQQ GQACCPVVEI NSSSSVEIVK 120 EEFEEECSRK RGRTGPCRKP GTKACREKKR RELLNDKFMD LSSVLEPTRT PKTDKPAILD 180 DAIRVVNQLR GEAHELKETN QKLLEEIKSL KAEKNELREE KMVLKSDKEK MEQQMRSMAA 240 VPSPGFMPSH PTGFHQNKMA VYGSYGYYPN MPMMPYLLPP SQRDTSQDQN NCSKAA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 128 | 150 | RKRGRTGPCRKPGTKACREKKRR |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013639210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013639210.1 | 0.0 | PREDICTED: transcription factor bHLH34-like | ||||
Refseq | XP_013746852.1 | 0.0 | transcription factor bHLH34-like | ||||
Swissprot | Q9LTC7 | 1e-127 | BH034_ARATH; Transcription factor bHLH34 | ||||
TrEMBL | A0A0D3ABB4 | 0.0 | A0A0D3ABB4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FUV4 | 0.0 | A0A3P6FUV4_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo1g102270.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23210.1 | 1e-105 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|