PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013639075.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 155aa MW: 17912.2 Da PI: 9.0129 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 119.3 | 3.7e-37 | 6 | 140 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 p+GfrF+Ptdee+ + yLk k ++g++ +++evi++vdiy+++P++L + + k++++ +yfF++++++y++g+r++r+tksg Wk+tg +++ XP_013639075.1 6 PVGFRFRPTDEEIFNPYLKSKnMDGNTSHVDEVISTVDIYSFDPSELAsQsstTRKETDNVLYFFCPKENRYNRGERQSRKTKSGSWKKTGVTTN 100 89*****************99355556888889**************843432222234466********************************* PP NAM 92 vlsk..kgelvglkktLvfykgrapkge..ktdWvmheyr 127 +++k + e++g k+++vf + g+ k+dWvmhey XP_013639075.1 101 IMRKrgDCEKIGEKRVFVFQYSKILGGTklKSDWVMHEYV 140 ***9666678*********855544444339********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 36.413 | 5 | 155 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.14E-37 | 5 | 143 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-22 | 6 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MVDPHPVGFR FRPTDEEIFN PYLKSKNMDG NTSHVDEVIS TVDIYSFDPS ELASQSSTTR 60 KETDNVLYFF CPKENRYNRG ERQSRKTKSG SWKKTGVTTN IMRKRGDCEK IGEKRVFVFQ 120 YSKILGGTKL KSDWVMHEYV ATFVSPNPDG DIYTM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-21 | 6 | 139 | 21 | 143 | NAC domain-containing protein 19 |
3swm_B | 4e-21 | 6 | 139 | 21 | 143 | NAC domain-containing protein 19 |
3swm_C | 4e-21 | 6 | 139 | 21 | 143 | NAC domain-containing protein 19 |
3swm_D | 4e-21 | 6 | 139 | 21 | 143 | NAC domain-containing protein 19 |
3swp_A | 4e-21 | 6 | 139 | 21 | 143 | NAC domain-containing protein 19 |
3swp_B | 4e-21 | 6 | 139 | 21 | 143 | NAC domain-containing protein 19 |
3swp_C | 4e-21 | 6 | 139 | 21 | 143 | NAC domain-containing protein 19 |
3swp_D | 4e-21 | 6 | 139 | 21 | 143 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013639075.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013639075.1 | 1e-114 | PREDICTED: NAC domain-containing protein 5-like | ||||
Swissprot | O81914 | 4e-54 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | A0A078FQS9 | 1e-103 | A0A078FQS9_BRANA; BnaC05g01030D protein | ||||
STRING | Bo5g002950.1 | 1e-104 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 2e-56 | NAC domain containing protein 5 |
Publications ? help Back to Top | |||
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