PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639072.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 378aa    MW: 43074.7 Da    PI: 6.7903
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639072.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.48e-3851273127
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +GfrF Ptdee+v++yL+ k  g +  +++++i++vdi+++ePw+Lp k + +++++ wyfF ++++ky++g+r++r+tksg+Wk+tg ++++++
  XP_013639072.1   5 VGFRFIPTDEEIVDYYLRLKNLGGDtSHVDKAISTVDICSFEPWELPsKsRRESRDQIWYFFGRKENKYNRGERQSRITKSGFWKKTGVTTNIIR 99 
                     7*****************99877773666677***************433445577799***********************************9 PP

             NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyr 127
                     k  ++e++g k++Lvf+       ++++Wvmhey 
  XP_013639072.1 100 KrgNREKIGEKRVLVFH-------SNSEWVMHEYV 127
                     9777888**********.......3689******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.2693146IPR003441NAC domain
SuperFamilySSF1019411.11E-394146IPR003441NAC domain
PfamPF023651.6E-215127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MENRVGFRFI PTDEEIVDYY LRLKNLGGDT SHVDKAISTV DICSFEPWEL PSKSRRESRD  60
QIWYFFGRKE NKYNRGERQS RITKSGFWKK TGVTTNIIRK RGNREKIGEK RVLVFHSNSE  120
WVMHEYVSTF LSPTQTTYTV CKVIFKGDPR DLPSSSSSAP GGGGGEVEHN HSQFTHMNNS  180
GEFEGLQNQR HFTGLLDAEK ETQIHDALCR GLDSVSTHDL NSFINCGNND EEHVNLLFMQ  240
ENRNDYRPKI SLTGFIDHSD DEDSDSDLIS ATTTGSIQTS SACDSFGSSN RRIDQITDLQ  300
NSPNSTTKLM SPTQVVRKTS LDASKEKSDV QGNEMGEYYK MDQEVINKKR GSFFYRKIRS  360
CIKKTLLCSP PTPQEHDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-22612620140NO APICAL MERISTEM PROTEIN
1ut4_B3e-22612620140NO APICAL MERISTEM PROTEIN
1ut7_A3e-22612620140NO APICAL MERISTEM PROTEIN
1ut7_B3e-22612620140NO APICAL MERISTEM PROTEIN
3swm_A3e-22612623143NAC domain-containing protein 19
3swm_B3e-22612623143NAC domain-containing protein 19
3swm_C3e-22612623143NAC domain-containing protein 19
3swm_D3e-22612623143NAC domain-containing protein 19
3swp_A3e-22612623143NAC domain-containing protein 19
3swp_B3e-22612623143NAC domain-containing protein 19
3swp_C3e-22612623143NAC domain-containing protein 19
3swp_D3e-22612623143NAC domain-containing protein 19
4dul_A3e-22612620140NAC domain-containing protein 19
4dul_B3e-22612620140NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00123DAPTransfer from AT1G02250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639072.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639072.10.0PREDICTED: NAC domain-containing protein 5-like
SwissprotO819141e-114NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A397XN330.0A0A397XN33_BRACM; Uncharacterized protein
STRINGBra033298.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.11e-111NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]