PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013639071.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 26758.9 Da PI: 7.7244 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87 | 3.4e-27 | 5 | 136 | 6 | 127 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 F+P ++el+++yL++k+++++ ++ + i+ev+i+++eP dLp +k + + wyf s+ + k + +r++ra k+g Wk tg++ ++++++g+ XP_013639071.1 5 TFNPPEDELINYYLNNKITENDDPEGTQINEVNICHHEPADLPGLAKIeSGHTWYFISPVK-KFGKLNRRKRASKTGHWKITGNSCTIKDTDGNP 98 7*********************999888***************543441345777777765.567789999************************ PP NAM 100 vglkktLvfykgrapkge..........ktdWvmheyr 127 +glkk Lvf ++++++++ k +W++he++ XP_013639071.1 99 IGLKKFLVFQENKNRRSStllpttahqhKFTWIIHEFH 136 **********65444443344444444499*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.014 | 1 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.8E-17 | 3 | 136 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-30 | 4 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MNKYTFNPPE DELINYYLNN KITENDDPEG TQINEVNICH HEPADLPGLA KIESGHTWYF 60 ISPVKKFGKL NRRKRASKTG HWKITGNSCT IKDTDGNPIG LKKFLVFQEN KNRRSSTLLP 120 TTAHQHKFTW IIHEFHSFLH HPNKMLTHHK DPVEDYGGDY CNDLEELTQS WEQGESSGLL 180 RGENGHVYGQ NTVENSNTTR AALTSQQRLS FNCFEDLKTK KRPSFGIFGS LLL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013639071.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013639071.1 | 1e-175 | PREDICTED: NAC domain-containing protein 4 | ||||
TrEMBL | A0A397XHE8 | 1e-134 | A0A397XHE8_BRACM; Uncharacterized protein (Fragment) | ||||
STRING | Bra033297.1-P | 1e-120 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14815 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04430.1 | 1e-102 | NAC domain containing protein 49 |