PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013639046.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HB-other | ||||||||
Protein Properties | Length: 159aa MW: 18481 Da PI: 6.5239 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.3 | 6.3e-09 | 69 | 106 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA++ gL+ +qV++WF N R + XP_013639046.1 69 FEHflHPYPSDVDKHILARQSGLSRSQVSNWFINARVR 106 664459******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.726 | 47 | 110 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.5E-8 | 50 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.16E-10 | 50 | 111 | No hit | No description |
SuperFamily | SSF46689 | 1.5E-17 | 51 | 118 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 53 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-17 | 67 | 106 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MSQALGERDE DNRGVSIAAR GETPRLRLLD QALRQQKSYR QMSLVEAHPW RPQRGLPERA 60 VTALRAWLFE HFLHPYPSDV DKHILARQSG LSRSQVSNWF INARVRLWKP MIEEMYCEET 120 RGGEEQQMDI INPMFVDTKP DPDQIIQVEP ESLSSIVTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 56 | 114 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 56 | 114 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 2e-16 | 56 | 114 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-16 | 56 | 114 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013639046.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352866 | 1e-153 | AK352866.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-O06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013639046.1 | 1e-115 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 2e-98 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A0D3C7W2 | 1e-114 | A0A0D3C7W2_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g006800.1 | 1e-115 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 4e-90 | TALE family protein |
Publications ? help Back to Top | |||
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