PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638791.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 208aa MW: 23799.9 Da PI: 5.4108 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.6 | 3.6e-16 | 30 | 120 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv +ps v ++ l++p +f+ g+ + s +tle++ g + ++kl ++ +++++l++GW+eF++a+ + eg f+ F ++g+s+f v+ XP_013638791.1 30 FFKVVLPSTVKRNM-LMIPPRFVILQGS--TLSEFVTLETPVGFRRSIKL--KRIGEEIWLQGGWSEFAEAHSISEGHFLFFDYKGNSTF--SVM 117 89999999998876.********66664..48889***************..**********************************9999..888 PP EE- CS B3 96 vfr 98 +f+ XP_013638791.1 118 IFN 120 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-23 | 23 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-21 | 25 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.37E-14 | 28 | 120 | No hit | No description |
PROSITE profile | PS50863 | 12.238 | 29 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-17 | 30 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.7E-14 | 30 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVTTRQTKAR VTTAFHRRPQ PEPDSSVKKF FKVVLPSTVK RNMLMIPPRF VILQGSTLSE 60 FVTLETPVGF RRSIKLKRIG EEIWLQGGWS EFAEAHSISE GHFLFFDYKG NSTFSVMIFN 120 VSACEIDYPL DAVHISDSDD EVMDVTDEGF LGTQGTRRND QGGGTNPKKR PRDDEFDKIL 180 NDVDEINSIK LLEEEEEGKR VFRGQQFF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638791.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240102 | 1e-123 | AC240102.1 Sisymbrium irio clone SIR-40E09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638791.1 | 1e-153 | PREDICTED: B3 domain-containing protein At3g18960 | ||||
Swissprot | Q84R27 | 8e-93 | Y3896_ARATH; B3 domain-containing protein At3g18960 | ||||
TrEMBL | A0A3P6F1G9 | 1e-151 | A0A3P6F1G9_BRAOL; Uncharacterized protein | ||||
STRING | Bra022374.1-P | 1e-117 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 3e-95 | B3 family protein |
Publications ? help Back to Top | |||
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