PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638716.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 351aa    MW: 39471.1 Da    PI: 4.8949
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18695197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffk++   ++++s  +v+p ++ +e  ++   +kt  l+ ++g   W+v +   k+++++++++GW++Fv++n+L++gD+++F +dg+++f  +v +
  XP_013638716.1  6 FFKIF--LSHFSSESMVVPASYYDELPLV--LPKTALLQGSDGgCFWKVAM--IKRRNEVYFGQGWSKFVEDNRLRDGDVLTFVYDGSRSF--TVDI 94
                    88888..89999999*********99998..8889****977769******..999999***************************98888..7766 PP

                    E CS
              B3 97 f 97
                    +
  XP_013638716.1 95 Y 95
                    5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.451498IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-20496IPR015300DNA-binding pseudobarrel domain
CDDcd100175.31E-17495No hitNo description
SuperFamilySSF1019362.55E-21496IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-22698IPR003340B3 DNA binding domain
PfamPF023624.8E-16695IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-9250335IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-7250341IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0099256348IPR003340B3 DNA binding domain
PROSITE profilePS508636.104313348IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MALPGFFKIF LSHFSSESMV VPASYYDELP LVLPKTALLQ GSDGGCFWKV AMIKRRNEVY  60
FGQGWSKFVE DNRLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDDD  120
DDDKEDTNTS SEPEMAQTVP NATNQEDSNI VEPEVAQRVP RTRSKGKKRV VVQDSDDSFI  180
SEDSDSLSDS SYSPPNDDTL LDVTPKVANS RKKGELRSVN SNVGTTSNSS GSVSRKRQST  240
IKNPEVYLDD PNNVCFEIIL KNRIYELTVP KQIVKDYCLK FQAYVCYIDN HESGTLEARV  300
ATWQDQRVSI KKWERICQRN GLKKGDSLLC ELFRKEGLVY AVKIHVVTTT S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1369611100At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638716.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638716.10.0PREDICTED: B3 domain-containing protein At4g34400-like
TrEMBLA0A0D3A3J40.0A0A0D3A3J4_BRAOL; Uncharacterized protein
STRINGBo1g016660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-39B3 family protein