PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013638637.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 538aa MW: 60519.5 Da PI: 8.7524

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013638637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.7	4.8e-14	23	101	12	97
HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ l +p f+++h g +k+ kt +l++ s ++W vk+ ++ + +t+GW++F+ a++L+ gD+++F+++g++ f +v++f XP_013638637.1 23 HTH-LNIPVAFFSKHvqGRNKHI-KTAKLRTyASAKTWLVKI--NGLR----FTDGWEDFAVAHELRIGDIIIFRHEGEMVF--HVTAF 101 444.99********7555544.7998888***..5555....9********************9998888..88776 PP
2	B3	67.8	1.5e-21	162	255	5	99
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++l+ +rl++pk fa ++g+++ ++k+++l +e+grsW+++++y+ ++ +++ + GW++F+ +ng+++g ++F+l++ +++ +v+++ r+ XP_013638637.1 162 HVSPSSLSCDRLYVPKGFAMSNGLDNMSGKEIVLLNEEGRSWNLNITYNESGMHTFVRPGWRSFCAENGMNQGHHCTFELVR-KSAPPVLRLSRA 255 5678899999*********************************************************************998.888888888775 PP
3	B3	59.9	4.3e-19	276	365	6	97
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++s++l+++ l+l kf++++g+kk s +++le+e+g +W+v l++ +s+r++l+ GWk F++ ng+k+ D+++ kl++ ++ ++v+ ++ XP_013638637.1 276 VSSNSLRTDKLYLQMKFVAANGLKKGFS-EIILENEWGGRWSVGLRHYASSNRTYLGPGWKTFCQVNGIKAEDSFMVKLVE-TGDKPVLLLC 365 57899999**************9887.***********************************************998.5555777776 PP
4	B3	49.5	7.9e-16	442	536	3	98
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++ ++lk++ lp f++ +g++k +++++l ++g ++W v l +k+ g++ ++kGW+e ++a+g+k+g++++++l++++e+ +v+k+ XP_013638637.1 442 RLTLTQNALKTSVKHLPLGFTRVNGINK--PRKIILLGKDGvKKWVVDLLKNKSTGTMRIRKGWRELCDAHGVKVGESFLLELIWDEEAIPVLKF 534 556678888999999*******9996..558****9***99999999***************************999999999 PP E- CS B3 97 fr 98 + XP_013638637.1 535 CT 536 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-21	8	106	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-19	9	111	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.617	11	104	IPR003340	B3 DNA binding domain
CDD	cd10017	2.38E-14	12	101	No hit	No description
SMART	SM01019	3.8E-21	14	104	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-8	25	98	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.2E-21	151	252	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-20	152	252	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.72	158	256	IPR003340	B3 DNA binding domain
CDD	cd10017	7.93E-17	158	245	No hit	No description
SMART	SM01019	6.4E-28	159	256	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-19	162	255	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.4E-15	268	367	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.324	271	367	IPR003340	B3 DNA binding domain
SMART	SM01019	6.1E-18	272	368	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.22E-15	275	368	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.0E-17	276	366	IPR003340	B3 DNA binding domain
CDD	cd10017	6.17E-14	277	365	No hit	No description
SuperFamily	SSF101936	2.55E-16	436	535	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.6E-16	436	536	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.70E-14	438	535	No hit	No description
SMART	SM01019	1.9E-20	440	538	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.576	440	537	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.1E-15	440	536	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MAHQSLHSPT NPHFFQPLLP GFHTHLNIPV AFFSKHVQGR NKHIKTAKLR TYASAKTWLV 60 KINGLRFTDG WEDFAVAHEL RIGDIIIFRH EGEMVFHVTA FGPSCCDIQY TSASSHNIID 120 DSQDQANNTV TGNSSGEKRK RVKKNPRTKE ESSSDHSHFV AHVSPSSLSC DRLYVPKGFA 180 MSNGLDNMSG KEIVLLNEEG RSWNLNITYN ESGMHTFVRP GWRSFCAENG MNQGHHCTFE 240 LVRKSAPPVL RLSRAEHDPK LAPESSLHHS YYVGSVSSNS LRTDKLYLQM KFVAANGLKK 300 GFSEIILENE WGGRWSVGLR HYASSNRTYL GPGWKTFCQV NGIKAEDSFM VKLVETGDKP 360 VLLLCTSNRG KTPLECSEDS DDVNSLSSDT SSGDDSGEES QESEEESLED DSSSKDCVEM 420 EKRKRSLRCK YPSSYSKHRF VRLTLTQNAL KTSVKHLPLG FTRVNGINKP RKIILLGKDG 480 VKKWVVDLLK NKSTGTMRIR KGWRELCDAH GVKVGESFLL ELIWDEEAIP VLKFCTKL

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MAHQSLHSPT NPHFFQPLLP GFHTHLNIPV AFFSKHVQGR NKHIKTAKLR TYASAKTWLV  60
KINGLRFTDG WEDFAVAHEL RIGDIIIFRH EGEMVFHVTA FGPSCCDIQY TSASSHNIID  120
DSQDQANNTV TGNSSGEKRK RVKKNPRTKE ESSSDHSHFV AHVSPSSLSC DRLYVPKGFA  180
MSNGLDNMSG KEIVLLNEEG RSWNLNITYN ESGMHTFVRP GWRSFCAENG MNQGHHCTFE  240
LVRKSAPPVL RLSRAEHDPK LAPESSLHHS YYVGSVSSNS LRTDKLYLQM KFVAANGLKK  300
GFSEIILENE WGGRWSVGLR HYASSNRTYL GPGWKTFCQV NGIKAEDSFM VKLVETGDKP  360
VLLLCTSNRG KTPLECSEDS DDVNSLSSDT SSGDDSGEES QESEEESLED DSSSKDCVEM  420
EKRKRSLRCK YPSSYSKHRF VRLTLTQNAL KTSVKHLPLG FTRVNGINKP RKIILLGKDG  480
VKKWVVDLLK NKSTGTMRIR KGWRELCDAH GVKVGESFLL ELIWDEEAIP VLKFCTKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013638637.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638637.1	0.0	PREDICTED: B3 domain-containing protein REM17-like isoform X1
Swissprot	Q84WP3	1e-154	REM17_ARATH; B3 domain-containing protein REM17
TrEMBL	A0A0D3CDE7	0.0	A0A0D3CDE7_BRAOL; Uncharacterized protein
STRING	Bo5g044970.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5781	16	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26680.1	1e-150	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]