PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638451.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 321aa MW: 34923.8 Da PI: 9.2416 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.4 | 3.1e-38 | 41 | 101 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++ XP_013638451.1 41 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 101 56789*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.5E-33 | 44 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.901 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-27 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 47 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MFGNCDQKKK MPIIQSPNTN PPASMQSKNM IVSPSHQQQP PQPQLKCPRC DSSNTKFCYY 60 NNYSLSQPRH FCKACKRYWT RGGTLRNVPV GGSYRKNKRV KRPATATAAS TASTTTSSSP 120 NNPHHQISHF PSMNHHPLFY GLSDHVSSCN SLPMFPSRFS DPPKTSSGLE GEFLSSGFNG 180 LGLGLQNHMS HDQTINGSFI NNSTTNKPFL PSSLFGSSVS SSSSTLLQHA HKPMNNNGEM 240 MGQSHLQTLA SLQDLHVGGD NEDVNKEGKL GEISGDMNGF MSSSSLDPSN YHNNWNNASV 300 SSGAWLDPTN NIVGSSLTSL I |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638451.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353065 | 0.0 | AK353065.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638451.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.4 | ||||
Swissprot | Q9FZA4 | 1e-136 | DOF14_ARATH; Dof zinc finger protein DOF1.4 | ||||
TrEMBL | A0A0D3CE83 | 0.0 | A0A0D3CE83_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g055750.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4709 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 1e-129 | Dof family protein |