PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638323.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 148aa MW: 16380.8 Da PI: 8.2163 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.2 | 0.00017 | 36 | 75 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d++ ++++ L++++ + +K + a++L A++YI L XP_013638323.1 36 KERKDKVGERISALQQIVSPY-----GKTDIASVLLDAMHYIEFL 75 88999**************99.....9***************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.147 | 26 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.59E-4 | 27 | 80 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-10 | 27 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-8 | 27 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MDFSSNAGMM MENKRNVVCS LEESNIKRHK SDLSSKERKD KVGERISALQ QIVSPYGKTD 60 IASVLLDAMH YIEFLHEQVK VLSAPYLQTV STAKLVEMEQ YSLSNRGLCL APMEFTAGVA 120 QSNGADIWAS VKTPPSPALN VKSQSPFR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638323.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353054 | 1e-129 | AK353054.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638323.1 | 1e-108 | PREDICTED: transcription factor bHLH113 | ||||
Swissprot | Q7XJU2 | 1e-85 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A0D3C7X5 | 1e-106 | A0A0D3C7X5_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g006930.1 | 1e-107 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 5e-88 | bHLH family protein |
Publications ? help Back to Top | |||
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