PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013637558.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 754aa MW: 83140.4 Da PI: 6.887

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013637558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.9	5.6e-21	72	127	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+++l+L++rqVk+WFqNrR+++k XP_013637558.1 72 KKRYHRHTPQQIQELESVFKECPHPDEKQRLDLSRRLNLDTRQVKFWFQNRRTQMK 127 688999***********************************************999 PP
2	START	181.7	4.1e-57	275	502	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 ela +a++elvk+a+ +ep+W +ss e++n++e+ ++f + + +ea++++g+v+ ++ lve+l+d+ +W e+++ k + XP_013637558.1 275 ELAVSAMDELVKMAQTSEPLWIQSSkgkrEMLNREEYDKSFRS--ClgpkpdgFVSEASKEVGMVIINSLALVETLMDSE-RWAEMFPcmiaKNS 366 57899******************999988888888888854..145999999**********************.********** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvt 165 t+e issg ga++lm+aelq+lsplvp R ++f+R+++q+ +g+w++vdvSvd +++ s+ +++lpSg+l+++++ng+ kvt XP_013637558.1 367 TIEIISSGmggtrnGAIHLMQAELQLLSPLVPvRQVTFLRFCKQHAEGVWAVVDVSVDRISERGGsasARSSLSCRRLPSGCLVHDMPNGYAKVT 461 *****************************************************98777765557778889***************** PP EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 w++h+++++ +h +r+lv+sgla+g k+wv++lqrqce+ XP_013637558.1 462 WIDHTEYDETNIHHSYRPLVSSGLAFGSKRWVSALQRQCES 502 *************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.19E-21	57	129	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-21	60	129	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.621	69	129	IPR001356	Homeobox domain
SMART	SM00389	4.9E-20	70	133	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-18	72	127	IPR001356	Homeobox domain
CDD	cd00086	4.31E-19	72	129	No hit	No description
PROSITE pattern	PS00027	0	104	127	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.427	266	505	IPR002913	START domain
SuperFamily	SSF55961	2.06E-28	269	503	No hit	No description
CDD	cd08875	2.09E-115	270	501	No hit	No description
SMART	SM00234	4.1E-47	275	502	IPR002913	START domain
Pfam	PF01852	2.1E-49	276	502	IPR002913	START domain
SuperFamily	SSF55961	2.61E-21	532	746	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MSGGPVQFSS PRLSLGLPTN VENKGGEVGR TGESYEVSVT RRSPESRSGS DNVEALSGED 60 DLDASDRPLK KKKRYHRHTP QQIQELESVF KECPHPDEKQ RLDLSRRLNL DTRQVKFWFQ 120 NRRTQMKTQI ERHENSLLRQ ENDKLRAENM SVREAMRNPM CGHCGASAVL GEISLEEHQL 180 RIENSRLKDE LDRLCALAGK FINRSDDAGS HQLPNSTLKL GVGSRNVDAG GGFTLLHPVF 240 EIPSSHFYSG LNALVNRTGT DIASGGVDEK SLYLELAVSA MDELVKMAQT SEPLWIQSSK 300 GKREMLNREE YDKSFRSCLG PKPDGFVSEA SKEVGMVIIN SLALVETLMD SERWAEMFPC 360 MIAKNSTIEI ISSGMGGTRN GAIHLMQAEL QLLSPLVPVR QVTFLRFCKQ HAEGVWAVVD 420 VSVDRISERG GSASARSSLS CRRLPSGCLV HDMPNGYAKV TWIDHTEYDE TNIHHSYRPL 480 VSSGLAFGSK RWVSALQRQC ESLAILMSSA IPNRNKPTPA ISSIGKKSML RLAQRMTENF 540 CRGVCASSSH KWSKLDIGNI DEDVRIMTRK NVDDSGEPPG ILLSAATSVW VPVTPRRLFD 600 FLRDELLRSE WDILSNGGPM QEIANIFKGQ DHSNSVSLLR STAMNASQSS MLILQETSID 660 ASGAVVVYAP VDIPAMHAVM NGGDSAYVAL LPSGFAILPD DQGTEETGSL LTVAFQILVN 720 SLPTAKLNVE SIETVSNLIS CTVQKIRAAL RCDK

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MSGGPVQFSS PRLSLGLPTN VENKGGEVGR TGESYEVSVT RRSPESRSGS DNVEALSGED  60
DLDASDRPLK KKKRYHRHTP QQIQELESVF KECPHPDEKQ RLDLSRRLNL DTRQVKFWFQ  120
NRRTQMKTQI ERHENSLLRQ ENDKLRAENM SVREAMRNPM CGHCGASAVL GEISLEEHQL  180
RIENSRLKDE LDRLCALAGK FINRSDDAGS HQLPNSTLKL GVGSRNVDAG GGFTLLHPVF  240
EIPSSHFYSG LNALVNRTGT DIASGGVDEK SLYLELAVSA MDELVKMAQT SEPLWIQSSK  300
GKREMLNREE YDKSFRSCLG PKPDGFVSEA SKEVGMVIIN SLALVETLMD SERWAEMFPC  360
MIAKNSTIEI ISSGMGGTRN GAIHLMQAEL QLLSPLVPVR QVTFLRFCKQ HAEGVWAVVD  420
VSVDRISERG GSASARSSLS CRRLPSGCLV HDMPNGYAKV TWIDHTEYDE TNIHHSYRPL  480
VSSGLAFGSK RWVSALQRQC ESLAILMSSA IPNRNKPTPA ISSIGKKSML RLAQRMTENF  540
CRGVCASSSH KWSKLDIGNI DEDVRIMTRK NVDDSGEPPG ILLSAATSVW VPVTPRRLFD  600
FLRDELLRSE WDILSNGGPM QEIANIFKGQ DHSNSVSLLR STAMNASQSS MLILQETSID  660
ASGAVVVYAP VDIPAMHAVM NGGDSAYVAL LPSGFAILPD DQGTEETGSL LTVAFQILVN  720
SLPTAKLNVE SIETVSNLIS CTVQKIRAAL RCDK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269\|PubMed:16778018}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013637558.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013637556.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X1
Refseq	XP_013637558.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X3
Swissprot	Q9M2E8	0.0	HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBL	A0A0D3BQ66	0.0	A0A0D3BQ66_BRAOL; Uncharacterized protein
STRING	Bo4g024940.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	0.0	homeodomain GLABROUS 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655]