PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013637526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 26264.6 Da PI: 8.2125 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.2e-09 | 52 | 98 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h e ErrRR+riNs +++Lr ll + K +Ka+ L k+v+ +++L XP_013637526.1 52 RKHREGERRRRERINSNLNKLRNLLSCN-----SKTDKATLLAKVVQRVNEL 98 569**********************997.....7***********9987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.414 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-7 | 52 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-11 | 53 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-11 | 53 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-6 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.1E-5 | 135 | 211 | No hit | No description |
SuperFamily | SSF55021 | 3.62E-5 | 135 | 211 | No hit | No description |
CDD | cd04873 | 5.73E-5 | 136 | 202 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MQPEISDQIL YSFLTGGSCA SSTTTTTTRS SFYPFAMEDT SSQDKALATT GRKHREGERR 60 RRERINSNLN KLRNLLSCNS KTDKATLLAK VVQRVNELKQ QTLEISNETV PSETDEISVL 120 NFENCSNDDG RIIFKVSFCC EDRPDLMQDL VETLKSLQME TLYAYMTTIG GRTRNDFVVI 180 GNKEKHSVES VKLLQNAFES LLERSNQSVM MGHGGGGERS KRRRPLDHII RV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 63 | KHREGERRRRER |
2 | 57 | 62 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013637526.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637526.1 | 1e-172 | PREDICTED: putative transcription factor bHLH107 | ||||
Swissprot | Q9LET0 | 1e-104 | BH107_ARATH; Putative transcription factor bHLH107 | ||||
TrEMBL | A0A0D3BXG0 | 1e-171 | A0A0D3BXG0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CQJ6 | 1e-171 | A0A3P6CQJ6_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g112750.1 | 1e-172 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 2e-86 | bHLH family protein |
Publications ? help Back to Top | |||
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