PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GATA

Protein Properties

Length: 353aa MW: 39552.2 Da PI: 8.0187

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013637276.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.3	4.4e-18	252	285	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +tkTp+WR gp g+ktLCnaCG++y++ + XP_013637276.1 252 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 285 99*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	5.1E-93	20	342	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	8.0E-16	246	296	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.78	246	282	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.33E-14	250	309	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.7E-14	250	283	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.76E-14	251	298	No hit	No description
PROSITE pattern	PS00344	0	252	277	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	4.7E-16	252	285	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009845	Biological Process	seed germination
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MVLIISEKNQ RSYLLYCKRK MFGQSFPEDL DCGNFFDNMD DLLDFPGGDI DVGFSIGDSD 60 SFPNIWTTHH DTWPAASEPV FASNTNSDSS PELYVPFEDI VKVERPQSFV EESLVEKKED 120 SFFTNTDSSS SHSQFRSSSP VSVLESSSSS SHTTNTTSLV LPGKHGRPRT KRPRPQVQEK 180 DKVNDTVFGA DSRLIIRIPK QFLSDHSKMI TKKKKKKAKV VSSSSWSEID LETNGNNNVD 240 SCSSEQNPVR KCMHCEVTKT PQWRLGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFTP 300 ALHSNSHKKV AEMRNKRCSS GSYTNEENDL HDLVLNNAYI GIGVGKSQRV DKF

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MVLIISEKNQ RSYLLYCKRK MFGQSFPEDL DCGNFFDNMD DLLDFPGGDI DVGFSIGDSD  60
SFPNIWTTHH DTWPAASEPV FASNTNSDSS PELYVPFEDI VKVERPQSFV EESLVEKKED  120
SFFTNTDSSS SHSQFRSSSP VSVLESSSSS SHTTNTTSLV LPGKHGRPRT KRPRPQVQEK  180
DKVNDTVFGA DSRLIIRIPK QFLSDHSKMI TKKKKKKAKV VSSSSWSEID LETNGNNNVD  240
SCSSEQNPVR KCMHCEVTKT PQWRLGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFTP  300
ALHSNSHKKV AEMRNKRCSS GSYTNEENDL HDLVLNNAYI GIGVGKSQRV DKF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	174	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013637276.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353461	0.0	AK353461.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-37-G07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013637276.1	0.0	PREDICTED: GATA transcription factor 8 isoform X1
Swissprot	Q9SV30	1e-168	GATA8_ARATH; GATA transcription factor 8
TrEMBL	A0A0D3BXX3	0.0	A0A0D3BXX3_BRAOL; GATA transcription factor
TrEMBL	A0A3P6C6I0	0.0	A0A3P6C6I0_BRAOL; GATA transcription factor
STRING	Bo4g118340.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4975	27	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	1e-139	GATA family protein

Publications ? help Back to Top
Choi D, et al. iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis. Mol Plant, 2014. 7(5): p. 792-813 [PMID:24380880] Li T,Wu XY,Li H,Song JH,Liu JY A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network. Mol Plant, 2016. 9(5): p. 650-661 [PMID:26961720]