PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013637084.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 649aa MW: 72209.8 Da PI: 6.6394 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.3e-13 | 334 | 380 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YIk+Lq XP_013637084.1 334 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYIKELQ 380 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.8E-51 | 50 | 231 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 3.93E-18 | 329 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.536 | 330 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.61E-15 | 333 | 384 | No hit | No description |
Pfam | PF00010 | 4.0E-11 | 334 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-17 | 334 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-17 | 336 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.1300.10 | 2.6E-4 | 599 | 646 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MNTSDVVGWE DEDTRSMVSA VLGNSASDFL TANSNSNQNL FLVMGTDDGL NEKLSRLVDS 60 PNPESFSWNY AVFWQQTVSR SGQQVLAWGD GCCREPKEEE SMAYNLEEEM RWQYMRKRVL 120 QKLHRMFGGS DEDDYALSLE NVTATEMFFL ASMYFFFNHG EGGPGRCFAS GRHVWLSDAV 180 GSDYCFRSFM VKSAGIRTVV MVPTDAGVLE LGSVWSLPEN VELVRSVQGL FARRVKPPNM 240 SGGKIHKLFG QELNSSHHNN NGSTIGYTSQ EIDVKVQENV NMVVVDDKNH KVMKTSCNEK 300 RPASLLPEGV SVVEEKRPRK RGRKPANGRE EALNHVEAER QRREKLNQRF YALRAVVPNI 360 SKMDKASLLG DAISYIKELQ ERVKIIEAEA VSESNTMTTK GEESQEVVDV QAGEEEVVVR 420 VVSPLESHPA SRIIQAMRNS EVVSVMESKL SLAEETLFHT FVVKNNNGSD PLTKEKVIAA 480 AYPETSLTQQ LLLPSSSSQV SDPKIKSASD AAMSLRRSLL GLHRQTHNLS LSKSSPFSIT 540 NISSPSAAVI GREISSIPFS LTQKLKPDSS NLVADRSRGQ SQLARLPSSR GYSNASLVRK 600 IPVLFHINAG MEEVLADYVH QELTRNLMVI SLGLFQIIVI KDVVVFLFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-27 | 328 | 397 | 2 | 71 | Transcription factor MYC2 |
5gnj_B | 7e-27 | 328 | 397 | 2 | 71 | Transcription factor MYC2 |
5gnj_E | 7e-27 | 328 | 397 | 2 | 71 | Transcription factor MYC2 |
5gnj_F | 7e-27 | 328 | 397 | 2 | 71 | Transcription factor MYC2 |
5gnj_G | 7e-27 | 328 | 397 | 2 | 71 | Transcription factor MYC2 |
5gnj_I | 7e-27 | 328 | 397 | 2 | 71 | Transcription factor MYC2 |
5gnj_M | 7e-27 | 328 | 397 | 2 | 71 | Transcription factor MYC2 |
5gnj_N | 7e-27 | 328 | 397 | 2 | 71 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 315 | 323 | KRPRKRGRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In seedlings, mainly expressed in root tips, cotyledons, hypocotyls, and leaves, as well as its guard cells. In adult plant, detectable in stems, flowers, and siliques. {ECO:0000269|PubMed:17828375}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00101 | PBM | Transfer from AT2G46510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013637084.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637084.1 | 0.0 | PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like isoform X1 | ||||
Swissprot | Q9ZPY8 | 0.0 | AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE | ||||
TrEMBL | A0A0D3BNS8 | 0.0 | A0A0D3BNS8_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g008180.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3758 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46510.1 | 0.0 | ABA-inducible BHLH-type transcription factor |
Publications ? help Back to Top | |||
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