PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013636674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 654aa MW: 72629.7 Da PI: 7.1146 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 382 | 419 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_013636674.1 382 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 419 554459******************************88 PP | |||||||
2 | BELL | 120.5 | 7.2e-39 | 245 | 316 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL s+l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+Fr+Lk+aia+qi XP_013636674.1 245 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRSLKEAIAGQI 316 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.4E-66 | 173 | 314 | IPR006563 | POX domain |
Pfam | PF07526 | 6.5E-45 | 179 | 313 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 360 | 423 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.87E-12 | 363 | 424 | No hit | No description |
SMART | SM00389 | 2.3E-9 | 363 | 427 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-17 | 364 | 430 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-29 | 366 | 429 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-18 | 380 | 419 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MIMKHVHPQI SINPEISAGS DGSLQTLILM NPTTYVQYTQ QDDDSNNNNN NSNNTNNNNS 60 FVFLNSHAPP QNASQQFIGI PLSGHEAASI TSADSISVLQ GYPPRVKYSH YSSHQVDSSH 120 QQAACETPRA HQGLFLTLSS QQQQQQHQNQ HQTFHHVGLG PGPGQNMRVG SGSTGIATLV 180 SSKYLEAAQE LLDEVVKADS NDINTRSQLF SSKKGTNETD NKAVGESSGG GEASEKNKVE 240 LGTVERQEIQ MKKAKLSSML HEVEQRYRQY HQQMQMVISS FEQAAGIGSA KSYTSLALKT 300 ISRQFRSLKE AIAGQIKAAN NSLGEEDSVS GVGRLKFVDH QLRQQRALQQ LGMIQHHPSN 360 NAWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL 420 WKPMVEEMYV EEMKEQGKNM GSMEKTPNLD QNNEDSASKS ASNQEKSPMG GRGVDNYHLN 480 PNQNGELEGV TGMQGSPKRL RTNEETMMQP NVDFTSNEKL TMKILEERQE IRSDGGYPFM 540 GNFGQYQMDE MSRFDVAVSD QELLAQRYSG NNNGVSLTLG LPHCDSLSST RHQGFMQTHH 600 GIPIGRRVKI GETEEYGAAN ISAATVHSSA AAYSAMNIQN QKRYVAQLLP DFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 369 | 427 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 369 | 427 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013636674.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189380 | 0.0 | AC189380.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB050K06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013636674.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 isoform X1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0D3BRP7 | 0.0 | A0A0D3BRP7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CES5 | 0.0 | A0A3P6CES5_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g036190.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5008 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 0.0 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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