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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013636620.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
ERF |
| Protein Properties |
Length: 231aa MW: 25481.1 Da PI: 5.3797 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013636620.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 61 | 2.6e-19 | 111 | 161 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+++AeIrdp++ng +r++lg++ t+e+Aa a+++a+ +l+g
XP_013636620.1 111 QYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFQLKG 161
59*******.***********9998..***********************9987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010200 | Biological Process | response to chitin |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MSGFDYNDST NSADSVNNGV NTPVFYRNPS FSNVILNDNW SDLPLSVDDS QDMAIYNTLR 60
DAVSSGWTPT VPPVSSPVAT AQVSVRDEKP ETVVASEASG SNAPPRQKGM QYRGVRRRPW 120
GKFAAEIRDP KKNGARVWLG TYETPEDAAV AYDRAAFQLK GSKAKLNFPH LIGTCKYEPV 180
RIRPRRRSPE PSVSDYSSSE QKSVGHVEDG ESSLVVSDLD FTVDQSAYTY F
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC002388 | 1e-114 | AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence. |
| GenBank | AF325089 | 1e-114 | AF325089.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840) mRNA, complete cds. |
| GenBank | AF370540 | 1e-114 | AF370540.1 Arabidopsis thaliana putative ethylene response element binding protein; EREBP (At2g44840; T13E15.15) mRNA, complete cds. |
| GenBank | AY072471 | 1e-114 | AY072471.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840; T13E15.15) mRNA, complete cds. |
| GenBank | CP002685 | 1e-114 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT2G44840.1 | 1e-94 | ethylene-responsive element binding factor 13 |
