PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013636620.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 231aa MW: 25481.1 Da PI: 5.3797

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013636620.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61	2.6e-19	111	161	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg++ t+e+Aa a+++a+ +l+g XP_013636620.1 111 QYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFQLKG 161 59*****.*******9998..*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.7E-36	111	175	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.3E-32	111	170	IPR001471	AP2/ERF domain
CDD	cd00018	2.80E-30	111	171	No hit	No description
PROSITE profile	PS51032	23.907	111	169	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-23	111	170	IPR016177	DNA-binding domain
Pfam	PF00847	8.6E-13	112	161	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.5E-13	112	123	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.5E-13	151	171	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSGFDYNDST NSADSVNNGV NTPVFYRNPS FSNVILNDNW SDLPLSVDDS QDMAIYNTLR 60 DAVSSGWTPT VPPVSSPVAT AQVSVRDEKP ETVVASEASG SNAPPRQKGM QYRGVRRRPW 120 GKFAAEIRDP KKNGARVWLG TYETPEDAAV AYDRAAFQLK GSKAKLNFPH LIGTCKYEPV 180 RIRPRRRSPE PSVSDYSSSE QKSVGHVEDG ESSLVVSDLD FTVDQSAYTY F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-31	108	169	2	63	ATERF1
3gcc_A	3e-31	108	169	2	63	ATERF1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269\|PubMed:11950980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:11950980}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00311	DAP	Transfer from AT2G44840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013636620.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269\|PubMed:11950980, ECO:0000269\|PubMed:12068110}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002388	1e-114	AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence.
GenBank	AF325089	1e-114	AF325089.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840) mRNA, complete cds.
GenBank	AF370540	1e-114	AF370540.1 Arabidopsis thaliana putative ethylene response element binding protein; EREBP (At2g44840; T13E15.15) mRNA, complete cds.
GenBank	AY072471	1e-114	AY072471.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840; T13E15.15) mRNA, complete cds.
GenBank	CP002685	1e-114	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013636620.1	1e-170	PREDICTED: ethylene-responsive transcription factor 13
Refseq	XP_013692148.1	1e-170	ethylene-responsive transcription factor 13
Swissprot	Q8L9K1	1e-123	ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBL	A0A078J2M6	1e-168	A0A078J2M6_BRANA; BnaC04g53270D protein
TrEMBL	A0A0D3BPY6	1e-168	A0A0D3BPY6_BRAOL; Uncharacterized protein
STRING	Bo4g024140.1	1e-169	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-94	ethylene-responsive element binding factor 13

Publications ? help Back to Top
Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum. Plant Physiol., 2007. 145(4): p. 1588-99 [PMID:17965181] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]