PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636159.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 319aa    MW: 36534.4 Da    PI: 7.977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636159.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH375.9e-12154204154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r++h  +Er+RR+++N  ++ Lr+l+P++   +  + + a+i+  A++++k L
  XP_013636159.1 154 QRMTHITVERNRRRQMNVYLSSLRSLIPPS---YILRGDQASIVGGAIDFVKLL 204
                     79****************************...9****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-15145217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-10152209No hitNo description
Gene3DG3DSA:4.10.280.101.2E-11152209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.475153204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-9154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-9159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEEKIQGQNK LSVSSLDQKV IVRRSLQVQG SSEDQRFVLE EDTMQQSEDL YSVLSLKDPN  60
FLALLSLQTL QKPPWELGDY LPHEVPEFHS PTNYYHQNPS LERINEAIST QELQLNPQRK  120
RRNSNNLVAA SVSREKRKRK RTKPTKNTEE MESQRMTHIT VERNRRRQMN VYLSSLRSLI  180
PPSYILRGDQ ASIVGGAIDF VKLLEQQLQS LEAQKSTQQT DSKDISLPAG DEEQSSKLRI  240
DATVIESHVN LKIQCPKKQG QLLRSIIWLE KLRFTVLHLN VTSPCNASVS YSFNLKMEDD  300
CTLTSADEIT AAVRQILDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119140KRRNSNNLVAASVSREKRKRKR
2136143RKRKRTKP
3154165RMTHITVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636159.10.0PREDICTED: transcription factor bHLH70 isoform X1
SwissprotO810371e-139BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A0D3BNQ40.0A0A0D3BNQ4_BRAOL; Uncharacterized protein
STRINGBo4g006950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-126bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]