PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013636013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SRS | ||||||||
Protein Properties | Length: 184aa MW: 20873.8 Da PI: 10.4149 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 154.5 | 7.1e-48 | 35 | 174 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstW+p+++ r+ + +s++++++k+ + ++s+k s l +++s +++ XP_013636013.1 35 EEKVCRDCGNRAKKECLFERCRTCCKSRGYKCATHVKSTWIPSHHHRSP-----S------SSSDRNRNKKLKIDSSDKPSVLIVPTTTSRRQER 118 6789***************************************998873.....1......2223344455555555666666666666666665 PP DUF702 99 eletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +++ lP +++++avf+++rv+++++ ++ e++Yq++v+i Ghvf+G+L+++G+++ XP_013636013.1 119 SFKEG-LPGKIEAPAVFKRTRVTAISNeEQSEIGYQATVTIHGHVFRGFLHYHGVDH 174 55544.*******************9857789***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.4E-44 | 37 | 173 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 8.1E-26 | 38 | 78 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.3E-26 | 124 | 172 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MLGLRNIILL PPPSQITHPS VEDNNNNKAR NSNVEEKVCR DCGNRAKKEC LFERCRTCCK 60 SRGYKCATHV KSTWIPSHHH RSPSSSSDRN RNKKLKIDSS DKPSVLIVPT TTSRRQERSF 120 KEGLPGKIEA PAVFKRTRVT AISNEEQSEI GYQATVTIHG HVFRGFLHYH GVDHNKVFPC 180 LSKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013636013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013636013.1 | 1e-135 | PREDICTED: protein SHI RELATED SEQUENCE 6-like | ||||
Swissprot | Q9M2U4 | 3e-91 | SRS6_ARATH; Protein SHI RELATED SEQUENCE 6 | ||||
TrEMBL | A0A078FLR0 | 1e-133 | A0A078FLR0_BRANA; BnaC04g26320D protein | ||||
STRING | Bo4g119970.1 | 1e-123 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11959 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54430.1 | 1e-91 | SHI-related sequence 6 |
Publications ? help Back to Top | |||
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