PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013635837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 242aa MW: 27404.5 Da PI: 9.4487 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.8 | 1.1e-14 | 19 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk+l +d +++++ +p++f ++ + k + + ++tl+ + sW+v+l + g + +kGW++F ++n+L +++f++F+ +g+++ +v XP_013635837.1 19 FFKILADEDLSSESMRLIPNEFWRRSKCK-NLPPKVTLKVAWESSWTVNL--SPFMGCyLMERKGWEKFLNDNHLGDNEFLTFTDEGNNCI--TV 108 99*********************988544.56779***************..66665525666*********************4444444..88 PP EEE-S CS B3 95 kvfrk 99 +f+k XP_013635837.1 109 DIFQK 113 88876 PP | |||||||
2 | B3 | 50 | 5.5e-16 | 160 | 237 | 13 | 96 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + l++p +fa+eh+ k + ++ ++ d++g+ Wev + + g+ ++++GW+ ++ gL +gD ++F+l++ +e+v+ v XP_013635837.1 160 LTVLSIPVTFAKEHMPK-VR-TKFVIHDPKGKPWEVVY--VPSNGSKLFSSGWRFLANGYGLAVGDLCTFRLVR--PREMVLEV 237 4569**********644.33.58***************..9999999************************987..44455555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-16 | 15 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.45E-15 | 17 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.46E-13 | 18 | 111 | No hit | No description |
PROSITE profile | PS50863 | 11.589 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-12 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-13 | 19 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-20 | 142 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.86E-20 | 144 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.858 | 148 | 241 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.52E-13 | 151 | 238 | No hit | No description |
SMART | SM01019 | 4.4E-14 | 151 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-13 | 158 | 234 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MARNIAFGRI QEDMNKTSFF KILADEDLSS ESMRLIPNEF WRRSKCKNLP PKVTLKVAWE 60 SSWTVNLSPF MGCYLMERKG WEKFLNDNHL GDNEFLTFTD EGNNCITVDI FQKNCIEILK 120 PLNTSSSTES KKKVDSNVYG ASSSSSSAAT FSLTIKKSHL TVLSIPVTFA KEHMPKVRTK 180 FVIHDPKGKP WEVVYVPSNG SKLFSSGWRF LANGYGLAVG DLCTFRLVRP REMVLEVLHS 240 SS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013635837.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635837.1 | 1e-180 | PREDICTED: B3 domain-containing protein At5g18090-like isoform X2 | ||||
TrEMBL | A0A078GDF1 | 1e-162 | A0A078GDF1_BRANA; BnaC04g49490D protein | ||||
TrEMBL | A0A3N6R616 | 1e-162 | A0A3N6R616_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6CP33 | 1e-162 | A0A3P6CP33_BRAOL; Uncharacterized protein | ||||
STRING | Bra037663.1-P | 1e-157 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35310.1 | 4e-48 | B3 family protein |