PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635693.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 189aa    MW: 22163 Da    PI: 6.521
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635693.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-1972126357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     k+ ++t+eql+ Le  F+++++++ e++ +L+k+lgL+ rq+ vWFqNr+a++k+
  XP_013635693.1  72 KKKKMTNEQLKLLEISFQEEMKLDPERKMKLSKELGLQPRQIAVWFQNRKARWKN 126
                     67899************************************************95 PP
2HD-ZIP_I/II110.21.4e-3572162292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kk+++++eq+klLE sF+ee kL+perK++l++eLglqprq+avWFqnr+AR+k+kqlE+ ye+L++++d + +e++ L++e  +L++ ++
  XP_013635693.1  72 KKKKMTNEQLKLLEISFQEEMKLDPERKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDIICQEKKLLQEELIQLKAMIR 162
                     9**************************************************************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1948129IPR009057Homeodomain-like
PROSITE profilePS5007116.30967127IPR001356Homeobox domain
PfamPF000463.8E-1672126IPR001356Homeobox domain
CDDcd000862.47E-1572128No hitNo description
SMARTSM003894.8E-1772131IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-2074134IPR009057Homeodomain-like
PRINTSPR000317.9E-598107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000317.9E-5107123IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEEDNMECWS SPFINDQSSS NFIYPFHSFN NVSGTRVVTQ GGPLHEHYYA PSAMVESSFG  60
EASNTNNGYE TKKKKMTNEQ LKLLEISFQE EMKLDPERKM KLSKELGLQP RQIAVWFQNR  120
KARWKNKQLE HLYESLRQEF DIICQEKKLL QEELIQLKAM IRENGASNNK QQTWENACSQ  180
AMQAQFQLN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00049PBMTransfer from AT2G36610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635693.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565691e-72DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635693.11e-140PREDICTED: homeobox-leucine zipper protein ATHB-22 isoform X2
RefseqXP_013709262.11e-140homeobox-leucine zipper protein ATHB-22
SwissprotQ4PSR78e-77ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBLA0A078H8I31e-138A0A078H8I3_BRANA; BnaC04g08710D protein
TrEMBLA0A0D3BRH61e-138A0A0D3BRH6_BRAOL; Uncharacterized protein
STRINGBo4g034490.11e-139(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36610.16e-69homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]