PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634830.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 296aa    MW: 33748.9 Da    PI: 6.7897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10118164455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  XP_013634830.1 118 EHVIAERKRREKLSEKFIALSALLPGL-----KKADKITVLDDAISRVKQLQ 164
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.392114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-15118182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-15118178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-7118164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-9119168No hitNo description
SMARTSM003531.1E-12120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDADFFLTDF SLENIDFDFN IYEEMNVSPV EASMHTQRGQ FSSSFDHQMN LDQLTEKPKP  60
AVKEMMINDK PRVISFDFSS NVSSSLAEED ILMDRLVRCG SKRKACSSST RSPTLAKEHV  120
IAERKRREKL SEKFIALSAL LPGLKKADKI TVLDDAISRV KQLQEQIRKL NEEKEARREM  180
ESMILVKKSK VLFDEEPYLS SSSSSSSHAK FDQLLPEIEA KVVQKEVLIR IHCEKRKGCM  240
INILNTIENL HLRIENSIVL PFGDSTLDIT VLAQMGKDFS VCAVKDLVRN LRLSMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127ERKRRE
2123128RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634830.10.0PREDICTED: transcription factor bHLH19
RefseqXP_013691463.10.0transcription factor bHLH19-like
SwissprotQ1PF161e-151BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A0D3C1B00.0A0A0D3C1B0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CWC00.0A0A3P6CWC0_BRAOL; Uncharacterized protein
STRINGBo4g151000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-142bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]